P Bala, P Kavadipula, S Sarkar, M D Bashyam. To β or not to β: Lack of correlation between APC mutation and β-catenin nuclear localization in colorectal cancer. J Gastrointestinal Cancer; 2022; in press
Shrivastava R, Pradhan G, Ghosh S and Mukhopadhyay S (2022). Rabaptin5 acts as a key regulator for Rab7l1-mediated phagosome maturation process. Immunology 165:328-340.
Sontyana B, Shrivastava R, Battu S, Ghosh S and Mukhopadhyay S (2022). Phagosome maturation and modulation of macrophage effector functions by intracellular pathogens: targets for therapeutics. Future Microbiology 17:59-76. (Invited Review)
R. Pal, M. K. Bisht, and S. Mukhopadhyay S (2022). Secretory proteins of Mycobacterium tuberculosis and their roles in modulation of host immune responses: Focus on therapeutic targets. The FEBS Journal. doi: 10.1111/febs.16369 (Invited review).
Ravi Pal, Madhu Babu Battu and Mukhopadhyay S (2022). Therapeutic application of PPE2 protein of Mycobacterium tuberculosis in inhibiting tissue inflammation. EMBO Molecular Medicine. DOI 10.15252/emmm.202114891
Rashmi Sipani and Rohit Joshi. Hox genes collaborate with helix-loop-helix factor Grainyhead to promote neuroblast apoptosis along the anterior-posterior axis of the Drosophila larval central nervous system. Genetics (in press 2022).
Rohit Joshi, Rashmi Sipani, Asif Bakshi. Roles of Drosophila Hox Genes in the Assembly of Neuromuscular Networks and Behavior. Front Cell Dev Biol. 2022 Jan 7;9:786993. doi: 10.3389/fcell.2021.786993. PMID: 35071230.
Vaishna RL, Satyavathi VV and Anupama K* 2022 Single grain analysis of the complex Basmati rice samples to determine the nature of admixtures and accurate adulteration quantification. J Food Sci Technol 59(4):1658-1663.
Chhakchhuak, P. I. R. and Sen, R. (2022). In vivo regulation of bacterial Rho-dependent transcription termination by the nascent RNA. Journal of Biological Chemistry, accepted.
F Zhao, S Tian, Q Wu, Z Li, L Ye, Y Zhuang, M Wang, Y Xie, S Zou, W Teng, Y Tong, D Tang, AK Mahato, M Benhamed, Z Liu, Y Zhang (2022). Utility of Triti-Map for bulk-segregated mapping of causal genes and regulatory elements in Triticeae. Plant Communications. https://doi.org/10.1016/j.xplc.2022.100304.
Desai, S; Dharavath, B; Manavalan, S; Rane, A; Redhu, A; Sunder, R; Butle, A; Mishra, R; Joshi, A; Togar, T; Apte, S; Bala, P; Chandrani, P; Chopra, S; Bashyam, MD; Banerjee, A; Prabhash, K; Nair, S; Dutt, A. Fusobacterium nucleatum is associated with inflammation and poor survival in early-stage HPV-negative tongue cancer. NAR Cancer, 2022; 4:1-13.
AK Chaudhary, A Gholse, HA Nagarajaram, AB Dalal, N Gupta, AK Dutta, S Danda, R Gupta, HV Sankar, GS Bhavani, KM Girisha, SR Phadke, P Ranganath, and MD Bashyam. Ectodysplasin pathogenic variants affecting the furin cleavage site and unusual clinical features define X-linked hypohidrotic ectodermal dysplasia in India. American Journal of Medical Genetics Part A, 2022;188A:788-805.
Shashank Saurav and Sunil Kumar Manna* (2022) Increased expression of Profilin potentiates chemotherapeutic agent-mediated tumour regression. Nature British Journal of Cancer (Accepted) (https://doi.org/10.1038/s41416-021-01683-5)
Pradip Bera, Abhishek Aher, Paula Brandao, Utsab Debnath, Varun Dewaker, Sunil K Manna*, Abhimanyu Jana, Chandana Pramanik, Basudev Mondal and Pulakesh Bera* (2022) Instigating in vitro Anticancer Activity of New Pyridine-thiazole Based Co(III), Mn(II) and Ni(II) Complexes: Synthesis, Structure, DFT, Docking and MD simulation Studies. Journal of Chemical Information and Modeling (Accepted).
Abhimanyu Jana, Abhishek Aher, Paula Brandao, Pradip Bera, Saphy Sharda, Ujjwal Phadikar, Sunil Kumar Manna, Ajit Kumar Mahapatra and Pulakesh Bera. (2022) Evaluation of the anticancer activities with various ligand substituents in Co(II/III)-picolyl phenolate derivatives: synthesis, characterization, DFT, DNA cleavage, and molecular docking studies. Dalton Transactions Issue 6, Page xx-xx. (https://doi.org/10.1039/D1DT02825A).
Abhimanyu Jana, Abhishek Aher, Paula Brandao, Saphy Sharda, Pradip Bera, Ujjwal Phadikar, Sunil Kumar Manna, Ajit Kumar Mahapatra and Pulakesh Bera. (2022) Dissociation of a tripodal pyridyl-pyrazole ligand and assortment of metal complex: Synthesis, structure, DFT, thermal stability, cytotoxicity, DNA cleavage, and molecular docking studies. Journal of Molecular Structure Volume 1256, 15 May 2022, 132479 (https://doi.org/10.1016/j.molstruc.2022.132479).
Askari, F.¶, Rasheed, M.¶ and Kaur, R. (2022) The yapsin family of aspartyl proteases regulate glucose homeostasis in Candida glabrata. Journal of Biological Chemistry (In Press). ¶Equal contribution.
Shruti Srivastava and Mukhopadhyay S. (2021). Mycobacterium tuberculosis protein PPE2 binds to DNA region containing promoter activity (2021). Biochemical and Biophysical Research Communications. 567:166-170.
Ravi Pal and Mukhopadhyay S. (2021). PPE2 protein of Mycobacterium tuberculosis affects myeloid hematopoiesis in mice (2021). Immunobiology. 226:152051.
Shruti Srivastava, Philip Raj Abraham and Mukhopadhyay S. (2021). Aptamers: An Emerging Tool for Diagnosis and Therapeutics in Tuberculosis. Frontiers in Cellular and Infection Microbiology. 11:656421.
Komal Dolasia, Faiza Nazar and Mukhopadhyay S (2021). Mycobacterium tuberculosis PPE18 protein inhibits MHC class II antigen presentation and B cell response in mice European Journal of Immunology. 513:603-619.
Pal R, Ghosh S and Mukhopadhyay S (2021). Moonlighting by PPE2 protein: Focus on Mycobacterial virulence. Journal of Immunology. 207:2393-2397. (Invited Review)
Hafeezunnisa, M., Chhakchhuak, P. I. R., Krishnakumar, J. and Sen, R. (2021) E. coli cryptic prophage expressions are controlled by Rho-dependent transcription termination primarily to regulate their toxin-antitoxin modules. FEBS Letters, 595, 2057-2067.
Shah A. and Bhandari R.✝ IP6K1 upregulates the formation of processing bodies by influencing protein-protein interactions on the mRNA cap Journal of Cell Science (2021) 134(24):jcs259117
Shukla A., Kaur M., Kanwar S., Kaur G., Sharma S., Ganguli S., Kumari V., Mazumder K., Pandey P., Rouached H., Rishi V., Bhandari R., and Pandey A.K.✝ Wheat inositol pyrophosphate kinase TaVIH2-3B modulates cell-wall composition and drought tolerance in Arabidopsis. BMC Biology (2021) 19, 1-23
Mlcochova P et al., SARS-CoV-2 B.1.617.2 Delta variant replication and immune invasion. Nature, 2021; 599:114-119.
Mahesh S Dhar et al., 2021. Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India. Science, 2021; 374:995-999
Pradip Bera, Abhishek Aher, Paula Brandao, Sunil Kumar Manna*, Indranil Bhattacharyya, Gopinath Mondal, Abhimanyu Jana, Ananyakumari Santra and Pulakesh Bera* (2021) Anticancer activity, DNA binding and docking study of M(II)-complexes (M = Zn, Cu and Ni) derived from a new pyrazine-thiazole ligand: synthesis, structure and DFT. New Journal of Chemistry Volume 45, Issue 27, 11999-12015 (https://doi.org/10.1039/D0NJ05883A).
Abhimanyu Jana, Abhishek Aher, Paula Brandao, Sunil Kumar Manna, Indranil Bhattacharyya, Gopinath Mondal, Abhimanyu Jana, Ananyakumari Santra and Pulakesh Bera (2021) Anticancer activity, DNA binding and docking study of M(II)-complexes (M = Zn, Cu and Ni) derived from a new pyrazine-thiazole ligand: synthesis, structure and DFT. New Journal of Chemistry 2021,45, 11999-12015 (https://doi.org/10.1039/D0NJ05883A).
Pradip Bera, Abhishek Aher, Paula Brandao, Sunil Kumar Manna, Indranil Bhattacharyya, Chandana Pramanik, Basudev Mandal, Satyabrata Das and Pulakesh Bera. (2021) Synthesis, structure elucidation and dft study of a new thiazole-pyridine anchored nnn donor and it's cobalt(II) complex: In-vitro antitumor activity against U937 cancer cells, dna binding property and molecular docking study. Journal of Molecular Structure Volume 1224, 15 January 2021, 129015 (https://doi.org/10.1016/j.molstruc.2020.129015).
Srinivas A, Padmavathi K, Viswakalyan K, Swarnalata G, Satish R and MD Bashyam. Aberrant cytoplasmic localization of ARID1B activates ERK signaling and promotes oncogenesis. J Cell Sci. 2021; 134:jcs251637.
Battu, A.¶, Purushotham, R.¶, and Kaur, R. (2021) An assay to determine NAD(P)H: quinone oxidoreductase activity in cell extracts from Candida glabrata. Bio-protocol 11(21): e4210. DOI: 10.21769/BioProtoc.4210. ¶Equal contribution.
Moirangthem, R.¶, Kumar, K.¶ and Kaur, R. (2021) Two functionally redundant FK506-binding proteins regulate multidrug resistance gene expression and govern azole antifungal resistance. Antimicrobial Agents and Chemotherapy 65 (6): e02415-20. ¶Equal contribution.
Battu, A., Purushotham, R., Dey, P., Vamshi, S.S. and Kaur, R. (2021) An aspartyl protease-mediated cleavage regulates structure and function of a flavodoxin-like protein and aids oxidative stress survival. PLoS Pathogens 17: e1009355.
Shanili Aricthota and Devyani Haldar (2021) DDK/Hsk1 phosphorylates and targets fission yeast histone deacetylase Hst4 for degradation to stabilize stalled DNA replication forks. eLife 10:e70787.
Dubey S, Majumder P, Penmatsa A, Sardesai AA. (2021) Topological analyses of the L-lysine exporter LysO reveal a critical role for a conserved pair of intramembrane solvent-exposed acidic residues. J. Biol. Chem. 4;297(4):101168.
Mohanrao R., Manorama R., Ganguli S., Madhusudhanan M.C., Bhandari R.✝ and Sureshan K.M.✝ Novel substrates for kinases involved in the biosynthesis of inositol pyrophosphates and their enhancement of ATPase activity of a kinase Molecules (2021) 26, 3601
Lolla P.*, Shah A.*, Unnikannan C.P., Oddi V. and Bhandari R✝. Inositol pyrophosphates promote MYC polyubiquitination by FBW7 to regulate cell survival Biochemical Journal (2021) 478, 1647-1661. (Cover image).
Samal, B and Chatterjee, S. (2021). Bacterial quorum sensing facilitates Xanthomonas campesteris pv. campestris invasion of host tissue and to maximize disease symptom. Journal of Experimental Botany. erab211, https://doi.org/10.1093/jxb/erab211.
Kakkar A, Verma RK, Samal B, Chatterjee S. (2021). Interplay between the cyclic di-GMP network and the cell-cell signalling components coordinates virulence associated functions in Xanthomonas oryzae pv. oryzae. Environ Microbiol. doi: 10.1111/1462-2920.15664.
Knapp KM, Fellows B, Aggarwal S, Dalal A, Bicknell LS. A synonymous variant in a non-canonical exon of CDC45 disrupts splicing in two affected sibs with Meier-Gorlin syndrome with craniosynostosis. Eur J Med Genet. 2021 Feb 25;64(4):104182.
Gupta A, Sabarinathan R, Bala P, Donipadi V, Vashisht D, Katika MR, Kandakatla M, Mitra D, Dalal A, Bashyam MD. A comprehensive profile of genomic variations in the SARS-CoV-2 isolates from the state of Telangana, India. J Gen Virol. 2021; 102:1-11.
Kausthubham N, Shukla A, Gupta N, Bhavani GS, Kulshrestha S, Das Bhowmik A, Moirangthem A, Bijarnia-Mahay S, Kabra M, Puri RD, Mandal K, Verma IC, Bielas SL, Phadke SR, Dalal A, Girisha KM. A dataset of variants derived from 1455 clinical and research exomes is efficient in variant prioritization for early-onset monogenic disorders in Indians. Hum Mutat. 2021 Jan 27.
M Callea*, F C Scalisi, I Yavuz, M S Dogan, C E Willoughby, M D Bashyam*, “HED (hypohidrotic ectodermal dysplasia): a review”. Journal of International Dental and Medical Research; 2021; 14:785-789. *combined corresponding authors.
Chanduri M and Bhandari R. Back-pyrophosphorylation assay to detect in vivo InsP7-dependent protein pyrophosphorylation in mammalian cells. Methods in Molecular Biology (2021) 2091, 93-105.
P Bala, A Singh*, K Padmavathi*, V Kotapalli, R Sabarinathan and MD Bashyam. Exome sequencing identifies ARID2 as a novel tumor suppressor in early-onset sporadic rectal cancer. Oncogene, 2021, 40(4):863-874.*, equal contribution.
Anupama K*, Pranathi K, Sundaram RM 2020 Assessment of genetic purity of bulked-seed of rice CMS lines using capillary electrophoresis. Electrophoresis 41(20):1749-1751.
Chatterjee S, Samal B, Singh P, Pradhan B.B, and Verma R.K. (2020). Transition of a solitary to a biofilm community life style in bacteria: Social cooperation and conflict in a unison response. Int. J. Dev. Biol. doi.org/10.1387/ijdb.190176sc
Verma RK, Biswas A, Kakkar A, Lomada SK, Pradhan BB, Chatterjee S. (2020). A Bacteriophytochrome Mediates Interplay between Light Sensing and the Second Messenger Cyclic Di-GMP to Control Social Behavior and Virulence. Cell Rep. 32(13):108202. doi: 10.1016/j.celrep.2020.108202. PMID: 32997993.
Vishwanath Jha, Ravi Pal, Dhiraj Kumar, and Sangita Mukhopadhyay (2020). ESAT-6 protein of Mycobacterium tuberculosis increases holotransferrin mediated iron uptake in macrophages by downregulating surface hemochromatosis protein HFE. Journal of Immunology. 205:3095-3106.
Komal Dolasia , Faiza Nazar and Sangita Mukhopadhya (2020). Mycobacterium tuberculosis PPE18 protein inhibits MHC class II antigen presentation and B cell response in mice European Journal of Immunology (In Press)
Sanyal R, Vimala A and Harinarayanan R (2020) Studies on the regulation of (p)ppGpp metabolism and its perturbation through the over-expression of Nudix Hydolases in Escherichia coli. Frontiers in Microbiology. 11:562804.
Sanyal R and Harinarayanan R (2020). Activation of RelA by pppGpp as the basis for its differential toxicity over ppGpp in Escherichia coli. J. Biosci. 45: 28.
Jagadeesh Chandra Bose K, Bishwajit Kapoor, Kamal Mandal, Shubhrima Ghosh, Raveendra Mokhamatam, Sunil Manna, and Sudit Mukhopadhyay*. (2020). Loss of mitochondrial localization of human FANCG causes defective FANCJ helicase. Molecular and Cellular Biology Volume 40 Issue 23 e00306-20 (doi: 10.1128/MCB.00306-20).
Abhimanyu Jana, Abhishek Aher, Paula Brandao, Syed Samim Ali, Sandip Kumar Samanta, Gopinath Mondal, Pradip Bera, Ananyakumari Santra, Sunil Kumar Manna, Ajit Kumar Mahapatra and Pulakesh Bera*. (2020). Picoline based fluorescence 'turn-on' chemosensor for zinc(II) ion recognition, cell imaging and cytotoxicity study: Synthesis, crystal structure, spectroscopy and DFT. Polyhedron Volume 192, 1 December 2020, 114815 (https://doi.org/10.1016/j.poly.2020.114815).
Pradip Bera; Abhishek Aher; Paula Brandao; Sunil Kumar Manna; Indranil Bhattacharyya; Chandana Pramanik; Basudev Mandal; Satyabrata Das; Pulakesh Bera (2020) Synthesis, structure elucidation and dft study of a new thiazole-pyridine anchored nnn donor and it's cobalt(II) complex: In-vitro antitumor activity against U937 cancer cells, dna binding property and molecular docking study. Journal of Molecular Structure DOI: 10.1016/j.molstruc.2020.129015.
Asif Bakshi, Rashmi Sipani, Neha Ghosh, Rohit Joshi. Sequential activation of Notch and Grainyhead gives apoptotic competence to Abdominal-B expressing larval neuroblasts in Drosophila Central nervous system. PLoS genetics. (2020) Aug 31;16(8):e1008976.
Asif Bakshi, Rohit Joshi. Role of glial niche in regulating neural stem cell proliferation in Drosophila central nervous system. J Neurosci Res. 2020 Aug 18. doi: 10.1002/jnr.24713.
Vadla Raghavendra, Chatterjee Nirupama and Haldar Devyani (2020) Cellular environment controls the dynamics of histone H3 lysine 56 acetylation in response to DNA damage in mammalian cells. Journal of Biosciences 45 (1), 19.
Rasheed, M.#, Battu, A.# and Kaur, R. (2020) Host-pathogen interaction in Candida glabrata infection: Current knowledge and implications for antifungal therapy. Expert Review of Anti-infective Therapy (In press). #Equal contribution.
Kumar, K. ¶, Moirangthem, R.¶ and Kaur, R. Genome protection: Histone H4 and beyond. Current Genetics (In press). ¶Equal contribution
Kumari, S., Kumar, M., Khandelwal, N.K., Pandey, A.K., Bhakt, P., Kaur, R., Prasad, .R, and Gaur, N.A. (2020) A homologous overexpression system to study roles of drug transporters in Candida glabrata. FEMS Yeast Research pii: foaa032.
Hafeezaunnisa, M. and Sen, R. (2020). The Rho-dependent transcription termination regulates broad-spectrum antibiotic sensitivity in Escherichia coli. submitted.
Sahu, M.S., Patra, S., Kumar, K. and Kaur R. (2020) SUMOylation in human pathogenic fungi: Role in physiology and virulence. Journal of Fungi (In press).
RSR Adduri, SA George, P Kavadipula, MD Bashyam. SMARCD1 is a transcriptional target of specific non-hotspot mutant p53 forms. J Cell Physiol. 2020;235:4559-4570
Kumar, K., Moirangthem, R. and Kaur, R (2020). Histone H4 dosage modulates DNA damage response in the pathogenic yeast Candida glabrata via homologous recombination pathway. PLoS Genetics 16: e1008620.
Sahu, M.S., Patra, S., Kumar, K. and Kaur, R. (2020) SUMOylation in human pathogenic fungi: Role in physiology and virulence. Journal of Fungi 6(1): pii: E32.
Aggarwal S, Vineeth VS, Das Bhowmik A, Tandon A, Kulkarni A, Narayanan DL, Bhattacherjee A, Dalal A. Exome sequencing for perinatal phenotypes: The significance of deep phenotyping. Prenat Diagn. 2020 Jan;40(2):260-273.
Nampoothiri S, Yesodharan D, Bhattacherjee A, Ahamed H, Puri RD, Gupta N, Kabra M, Ranganath P, Bhat M, Phadke S, Radha Rama Devi A, Jagadeesh S, Danda S, Sylaja PN, Mandal K, Bijarnia-Mahay S, Makkar R, Verma IC, Dalal A, Ramaswami U. Fabry disease in India: A multicenter study of the clinical and mutation spectrum in 54 patients. JIMD Rep. 2020 Aug 15;56(1):82-94
Komaravalli PL, Rani S V, Dalal A, Jahan P. Association analysis of FMR1 genetic variants and primary ovarian insufficiency in South Indian women with a novel approach of CGG repeats classification. Eur J Med Genet. 2020 Dec;63(12):104081.
Girisha KM, Pande S, Dalal A, Phadke SR. Untapped opportunities for rare disease gene discovery in India. Am J Med Genet A. 2020 Dec;182(12):3056-3059.
Dutta UR, Suttur MS, Venugopal VS, Posanapally LP, Gopalasetty S, Talwar S, Anand S, Billapati S, Jesudasan RA, Dalal A. Cytogenetic and molecular study of 370 infertile men in South India highlighting the importance of copy number variations by multiplex ligation-dependent probe amplification. Andrologia. 2020 Aug 13:e13761.
Shetty K, Sarma AS, Devan M, Dalal A, Dash GK, Jannabhatla A, Patil SJ. Recurrent ADCY5 Mutation in Mosaic Form with Nocturnal Paroxysmal Dyskinesias and Video Electroencephalography Documentation of Dramatic Response to Caffeine Treatment. J Mov Disord. 2020 Aug;13(3):238-240.
Pasumarthi D, Gupta N, Sheth J, Jain SJMN, Rungsung I, Kabra M, Ranganath P, Aggarwal S, Phadke SR, Girisha KM, Shukla A, Datar C, Verma IC, Puri RD, Bhavsar R, Mistry M, Sankar VH, Gowrishankar K, Agrawal D, Nair M, Danda S, Soni JP, Dalal A. Identification and characterization of 30 novel pathogenic variations in 69 unrelated Indian patients with Mucolipidosis Type II and Type III. J Hum Genet. 2020 Nov;65(11):971-984.
Ranganath P, Perala S, Nair L, Pamu PK, Shankar A, Murugan S, Dalal A. A newly recognized multiple malformation syndrome with caudal regression associated with a biallelic c.402G>A variant in TBX4. Eur J Hum Genet. 2020 May;28(5):669-673.
Arora V, Setia N, Dalal A, Vanaja MC, Gupta D, Razdan T, Phadke SR, Saxena R, Rohtagi A, Verma IC, Puri RD. Sialidosis type II: Expansion of phenotypic spectrum and identification of a common mutation in seven patients. Mol Genet Metab Rep. 2020 Jan 11;22:100561.
Rasheed, M., Kumar, N. and Kaur R. (2020) Global secretome characterization of the pathogenic yeast Candida glabrata. Journal of Proteome Research 19: 49-63.
Vignesh P, Sharma M, Pilania RK, Shandilya JK, Kaur A, Goel S, Kaur A, Suri D, Rawat A, Dalal A, Sarma AS, Singh S. Myriad Faces of Chronic Granulomatous Disease: All in an Indian Family with Novel CYBB Defect. J Clin Immunol. 2019 Aug;39(6):611-615.
Samal B and Chatterjee S. (2019). New insight into bacterial social communication in natural host: evidence for interplay of heterogeneous and unison quorum response. PLOS Genetics. 15(9):e1008395. doi: 10.1371/journal.pgen.1008395.
Narayanan DL, Ranganath P, Aggarwal S, Dalal A, Phadke SR, Mandal K. Computer-aided Facial Analysis in Diagnosing Dysmorphic Syndromes in Indian Children. Indian Pediatr. 2019 Dec 15;56(12):1017-1019.
Ganguli S, Shah S, Hamid A, Singh A, Palakurti R and Bhandari R. A high energy phosphate jump - from pyrophospho-inositol to pyrophospho-serine. Advances in Biological Regulation (2019) 75, 100662
Shaunak Deota, Sivasudhan Rathnachalam, Kanojia Namrata, Mayank Boob, Amit Fulzele, S Radhika, Shubhra Ganguli, Chinthapalli Balaji, Stephanie Kaypee, Krishna Kant Vishwakarma, Tapas Kumar Kundu, Rashna Bhandari, Anne Gonzalez de Peredo, Mithilesh Mishra, Ravindra Venkatramani, Ullas Kolthur-Seetharam. Allosteric regulation of cyclin-B binding by the charge state of catalytic lysine in CDK1 is essential for cell-cycle progression. Journal of Molecular Biology (2019) 431, 2127-2142
Singh J., Steck N., De D., Hofer A., Ripp A., Captain I., Keller M., Wender P.A., Bhandari R., and Jessen H.J.✝ A phosphoramidite analogue of cyclotriphosphate enables iterative polyphosphorylations. Angewandte Chemie (2019) 58, 3928-3933.
Pradip Bera, Abhishek Aher, Paula Brandao, Sunil Kumar Manna*, Gopinath Mondal, Abhimanyu Jana, Ananyakumari Santra, Harekrishna Jana, and Pulakesh Bera. "induced apoptosis against U937 cancer cells by Fe (II), Co (III) and Ni (II) complexes with a pyrazine-thiazole ligand: Synthesis, structure and biological evaluation. Polyhedron Volume 182, 15 May 2020, 114503 (https://doi.org/10.1016/j.poly.2020.114503).
Caroline R. Delma, SomasundaramThirugnanasambandan, Guru Prasad Srinivasan, Nune Raviprakash, Sunil K Manna, Mohan Natarajan and Natarajan Aravindan. 2019. Fucoidan from marine brown algae attenuates pancreatic cancer progression by regulating p53 - NF?B crosstalk. Phytochemistry 167, 112078.
Pradip Bera, Paula Brandao, Gopinath Mondal, Ananyakumari Santra, Abhimanyu Jana, Raveendra Babu Mokhamatam, Sunil Kumar Manna, Tarun Kanti Mandal and Pulakesh Bera. 2019. An unusual iminoacylation of 2-amino pyridyl thiazole: Synthesis, X-ray crystallography and DFT study of copper(II) amidine complexes and their cytotoxicity, DNA binding and cleavage study. Polyhedron 159, 436-445.
Kumar, K., Askari, F., Sahu, M.S. and Kaur R. (2019) Candida glabrata: A lot more than meets the eye. Microorganisms 7(2): pii: E39.
Choudhary, D.K.¶, Bhakt, P.¶ and Kaur, R. (2019) Essential role for the phosphatidylinositol 3,5-bisphosphate synthesis complex in caspofungin tolerance and virulence in Candida glabrata. Antimicrobial Agents and Chemotherapy 63: pii: e00886-19. ¶Equal contribution.
Pal, K., Yadav, M., Jain, S., Ghosh, B., Sen, R. and Sen, U. (2019). Vibrio cholerae YaeO is a structural homologue of RNA chaperone Hfq that inhibits Rho-dependent transcription termination by dissociating its hexameric state. Journal of Molecular Biology, 431(24), 4749-4766.
Wahl, M. and Sen, R. (2019). Exploiting phage strategies to modulate bacterial transcription. Transcription, Oct 30:1-9.
Singh, S.,Godavarthi, S., Kumar, A. and Sen, R. (2019). A genomics approach to identify novel mycobacteriophage proteins having mycobactericidal properties. Microbiology, Jul;165(7):722-736.
Jain, S., Gupta, R, and Sen, R. (2019) Rho-dependent transcription termination in bacteria recycles RNA polymerases stalled at the DNA lesions. Nature Communications, Mar 14; 10(1):1207.doi: 10.1038/s41467-019-09146-5.
Chhakchhuak, P.I.R., Khatri, A. and Sen, R. (2019) Mechanism of action of bacterial transcription terminator Rho. Proc Indian Natn Sci Acad. 85, 157-168; DOI: 10.16943/ptinsa/2018/49436
Nalini Raghunathan, Sayantan Goswami, Jakku K Leela, Apuratha Pandiyan, and Jayaraman Gowrishankar. 2019. A new role for scherichia coli Dam DNA methylase in prevention of aberrant chromosomal replication, Nucleic Acids Research 47(11), 5698–5711, https://doi.org/10.1093/nar/gkz242.
Neha Ghosh, Asif Bakshi, Risha Khandelwal, Sriivatsan Govinda Rajan and Rohit Joshi*. The Hox gene Abdominal-B uses DoublesexF as a cofactor to promote neuroblast apoptosis in the Drosophila central nervous system. Development (2019) 146, dev175158. doi:10.1242/dev.175158.https://dev.biologists.org/content/146/16/dev175158
Jha V, Rao RN, Janardhan S, Raman R, Sastry GN, Sharma V, Rao JS, Kumar D and Mukhopadhyay S (2019). Uncovering structural and molecular dynamics of ESAT-6:β2M interaction: Asp53 of human β2-Microglobulin is critical for the ESAT-6:β2M complexation. Journal of Immunology. 203:1918-1929.
Srivastava S, Battu MB, Khan MZ, Nandicoori VK, Mukhopadhyay S. Mycobacterium tuberculosis PPE2 Protein Interacts with p67(phox) and Inhibits Reactive Oxygen Species Production. J Immunol. 2019 Aug 2. pii: ji1801143. doi: 10.4049/jimmunol.1801143
Pal R, Nazar F and Mukhopadhyay S*. The PE and PPE family proteins of Mycobacterium tuberculosis: What they are upto? (2019) A chapter in the book titled "Mycobacterium tuberculosis: Molecular & Functional Epidemiology, Virulence, and Pathogenesis" published by Springer.
Udgata A, Dolasia K, Ghosh S, Mukhopadhyay S. Dribbling through the host defence: targeting the TLRs by pathogens. Crit Rev Microbiol. 2019 May;45(3):354-368.
Pradhan G, Raj Abraham P, Shrivastava R, Mukhopadhyay S. Calcium Signaling Commands Phagosome Maturation Process. Int Rev Immunol. 2019;38(2):57-69.
MD Bashyam, S Animireddy, P Bala, A Naz, SA George. The Yin and Yang of cancer genes. Gene, 2019, 704:121-133.
Murali Dharan Bashyam, Srinivas Animireddy and Pratyusha Bala. Taming the Master: SWI/SNF chromatin remodeler as a therapeutic target in cancer. Current Science, 2019; 116:1653-1655.
Tyagi R, Kumar S, Dalal A, Mohammed F, Mohanty M, Kaur P, Anand A. Repurposing Pathogenic Variants of DMD Gene and its Isoforms for DMD Exon Skipping Intervention. Curr Genomics. 2019 Nov;20(7):519-530.
Tallapaka K, Ranganath P, Ramachandran A, Uppin MS, Perala S, Aggarwal S, Lakshmi D, Meena AK, Dalal AB. Molecular and Histopathological Characterization of Patients Presenting with the Duchenne Muscular Dystrophy Phenotype in a Tertiary Care Center in Southern India. Indian Pediatr. 2019 Jul 15;56(7):556-559.
Narayanan DL, Ranganath P, Balakrishnan S, Dalal A. Mosaic paternal uniparental isodisomy of 15q11-q13 region causing Angelman phenotype. Clin Dysmorphol. 2019 Oct;28(4):202-204.
Narayanan DL, Matta D, Gupta N, Kabra M, Ranganath P, Aggarwal S, Phadke SR, Datar C, Gowrishankar K, Kamate M, Jain JMN, (2019). Spectrum of ARSA variations in Asian Indian patients with Arylsulfatase A deficient metachromatic leukodystrophy. J Hum Genet. 2019 Apr;64(4):323-331.
Vineeth VS, Das Bhowmik A, Balakrishnan S, Dalal A, Aggarwal S (2019). Homozygous PCDH12 variants result in phenotype of cerebellar ataxia, dystonia, retinopathy and dysmorphism. Journal of Human Genetics 64(2):183-189.
Tallapaka K, Aggarwal S, Bhattacherjee A, Das Bhowmik A, Dalal A. Co-Occurrence of Leber Congenital Amaurosis and Meckel Syndrome Type 1 in a Fetus: Is There a Lesson to Be Learned? Mol Syndromol. 2019 May;10(3):177-182.
Dutta UR, Swamy V, Ponnala R, Aggarwal S, Dalal A. Determining the Cause of Recurrent Miscarriages in a Couple: Importance of NOR in the Era of NGS. J Reprod Infertil. 2019 Apr-Jun;20(2):109-114.
Sheth J, Bhavsar R, Mistri M, Pancholi D, Bavdekar A, Dalal A, Ranganath P, Girisha KM, Shukla A, Phadke S, Puri R, Panigrahi I, Kaur A, Muranjan M, Goyal M, Ramadevi R, Shah R, Nampoothiri S, Danda S, Datar C, Kapoor S, Bhatwadekar S, Sheth F. Gaucher disease: single gene molecular characterization of one-hundred Indian patients reveals novel variants and the most prevalent mutation. BMC Med Genet. 2019 Feb 14;20(1):31.
Ansari M.Z., Kumar A., Ahari D., Priyadarshi A., Padmavathi L., Bhandari R. and Swaminathan R. Protein charge transfer absorption spectra: an intrinsic probe to monitor structural and oligomeric transitions in proteins. Faraday Discussions (2018) 207, 91-113.
Abhimanyu Jana, Paula Brandao, Gopinath Mondal, Pradip Bera, Ananya Kumari Santra, , Raveendra Babu Mokhamatam, Sunil Kumar Manna, Nandan Bhattacharyya, and Pulakesh Bera. (2018) Synthesis, Characterization, Cytotoxicity Effect and DNA Cleavage Study of Symmetric Dinuclear Chloro and Azido Bridged Copper(II) Complexes of Napthyl-pyrazole Based Ligand. Inorganica Chimica Acta. 482: 621-634.
Tushar S. Basu Baul, Dhrubajyoti Dutta, Andrew Duthie, Bruno G. M. Rocha, M. Fatima C. Guedes da Silva, Shashank Saurav, and Sunil K. Manna*. (2018) Syntheses, Structural Snapshots, Solution Redox Properties, and Cytotoxic Performances of Designated Ferrocene Scaffolds Appended with Organostannyl(IV) benzoates en Route for Human Hepatic Carcinoma. Organometallics 37: 2961-2979.
Gupta P, Zaidi AH, Manna SK* (2018) Suppression of IKK, but not activation of p53 is responsible for cell death mediated by naturally occurring oxidized tetranortriterpenoid. J Cell Biochem. 119(8): 6828-6841.
Ghosh, G., Reddy, J. Sambhare, S. and Sen, R. (2018) A bacteriophage capsid protein is an inhibitor of a conserved transcription terminator of various bacterial pathogens. Journal of Bacteriology, 200(1): e00380-17, 1-16.
Bhakt, P., Shivarathri, R.¶, Choudhary, D.K.¶, Borah, S. and Kaur, R. (2018) Fluconazole-induced actin cytoskeleton remodeling requires phosphatidylinositol 3-phosphate 5-kinase in the pathogenic yeast Candida glabrata.Molecular Microbiology 110: 425-443. ¶Equal contribution.
Abraham PR, Devalraju KP, Jha V, Valluri VL and Mukhopadhyay S (2018). PPE17 (Rv1168c) protein of Mycobacterium tuberculosis detects individuals with latent TB infection. PLoS One (In press).
Qureshi R, Rameshwaram NR, Battu MB and Mukhopadhyay S (2018). PPE65 of M. tuberculosis regulate pro-inflammatory signalling through LRR domains of Toll like receptor-2. Biochem Biophys Res Commun. 2018 Nov 21. pii: S0006-291X(18)32518-X.
Nalini Raghunathan, Rajvardhan M Kapshikar, Jakku K Leela, Jillella Mallikarjun, Philippe Bouloc, Jayaraman Gowrishankar (2018). Genome-wide relationship between R-loop formation and antisense transcription in Escherichia coli Nucleic Acids Research, 46(7):3400–3411
Lindsey Clarke*, Raju SR Adduri*, Paul Smyth*, Fiona Quinn, Michael Jeffers, Barbara Dunne, John O’Leary, Susan McKiernan, Elisabeth Vandenberghe, Saumyadipta Pyne, Murali Dharan Bashyam, Orla Sheils and Richard Flavin. Potential microRNA signature of Enteropathy-Associated T-cell lymphoma: a pilot study. Leukemia Research Reports, 2018;10:52-54.*, joint first author.
Verma R.K, Samal B, Chatterjee S. (2018). Xanthomonas oryzae pv. oryzae Xanthomonas oryzae pv. oryzae chemotaxis components and chemoreceptor Mcp2 is involved in sensing constituent of xylem sap and contribute to regulation of virulence associated functions and entry into rice. Molecular Plant Pathology. doi: 10.1111/mpp.12718
Pandey S.S, Patnana P.K, Padhi Y, and Chatterjee S. (2018). Low-iron conditions induces the hypersensitive reaction and pathogenicity hrp genes expression in Xanthomonas and is involved in modulation of hypersensitive response and virulence. Environmental Microbiology Reports. doi.org/10.1111/1758-2229.12650
N. R. Rameshwaram, P.Singh, S. Ghosh and S. Mukhopadhyay (2018). Lipids and lipases in the physiology and pathogenicity of Mycobacterium tuberculosis and other intracellular bacteria. Future Microbiology Microbiology 19: 172-186.
P. Singh, N. R. Rameshwaram, S. Ghosh and S. Mukhopadhyay (2018). Cell envelope lipids in the pathophysiology of Mycobacterium tuberculosis. Future Microbiology 13: 689-710.
G. Pradhan, R. Shrivastva, and S. Mukhopadhyay (2018). Mycobacterial PknG Targets the Rab7l1 Signaling Pathway To Inhibit Phagosome–Lysosome Fusion. Journal of Immunology 201(5):1421-1433.
Vineeth VS, Dutta UR, Tallapaka K, Das Bhowmik A, Dalal A (2018). Whole exome sequencing identifies a novel 5 Mb deletion at 14q12 region in a patient with global developmental delay, microcephaly and seizures. Gene 673, 56-60.
Das Bhowmik A, Dalal A, Tandon A, Aggarwal S (2018). Exome sequencing identifies novel ACE splice-site variant in a fetus with renal tubular dysgenesis. Journal of Obstetrics and Gynaecology Research doi: 10.1111/jog.13771 [Epub ahead of print].
Dutta UR, Rao SN, Pidugu VK, Vineeth VS, Bhattacherjee A, Bhowmik AD, Ramaswamy SK, Singh KG, Dalal A (2018). Breakpoint mapping of a novel de novo translocation t(X;20)(q11.1;p13) by positional cloning and long read sequencing. Genomics doi: 10.1016/j.ygeno.2018.07.005 [Epub ahead of print].
Lahari K, Shalini A, Raghavendra V and Devyani Haldar (2018) Fission yeast sirtuin Hst4 functions in preserving genomic integrity by regulating replisome component Mcl1. Scientific Reports 8(1):8496.
Raghavendra Vadla and Devyani Haldar (2018) Mammalian target of rapamycin complex 2 (mTORC2) controls glycolytic gene expression by regulating Histone H3 Lysine 56 acetylation. Cell cycle 17:110-123.
Amrita Sengupta and Devyani Haldar (2018) Human Sirtuin 3 (SIRT3) deacetylates histone H3 lysine 56 to promote Nonhomologous end joining repair. DNA Repair 61; 1-16.
A. Ahmed, K. Dolasia and S. Mukhopadhyay (2018). Mycobacterium tuberculosis PPE18 Protein Reduces Inflammation and Increases Survival in Animal Model of Sepsis. Journal of Immunology. April 18, 2018, doi:10.4049/jimmunol.1602065.
Das Bhowmik A, Patil SJ, Deshpande DV, Bhat V, Dalal A (2018). Novel splice-site variant of UCHL1 in an Indian family with autosomal recessive spastic paraplegia-79. Journal of Human Genetics doi: 10.1038/s10038-018-0463-6, [Epub ahead of print].
Aggarwal S, Das Bhowmik A, Tandon A, Dalal A (2018). Exome sequencing reveals blended phenotype of double heterozygous FBN1 and FBN2 variants in a fetus. European Journal of Medical Genetics doi: 10.1016/j.ejmg.2018.02.009, [Epub ahead of print].
Patil SJ, Das Bhowmik A, Bhat V, Satidevi Vineeth V, Vasudevamurthy R, Dalal A (2018). Autosomal Recessive Otofaciocervical syndrome type 2 With Novel Homozygous Small Insertion In PAX1 gene. American Journal of Medical Genetics Part A 176(5), 1200-1206.
Aggarwal S, Tandon A, Das Bhowmik A, Safarulla JMNJ, Dalal A (2018). A dysmorphology based systematic approach towards perinatal genetic diagnosis in a fetal autopsy series. Fetal & Pediatric Pathology 37(1), 49-68.
Godbole KG, Ramachandran A, Karkamkar AS, Dalal AB (2018). Compound Heterozygosity for Hb Alperton (HBB: c.407C>T) and IVS-I-5 (G>C) (HBB: c.92+5G>C) Mutations Presenting as a Moderate Anemia in an Indian Family. Hemoglobin. doi: 10.1080/03630269.2018.1450754. [Epub ahead of print].
Nagarajan K, Swamiappan E, Anbazhagan S, Dalal A, Adithan S, Krings T (2018). "Twig-like" cerebral vessels are not pathognomonic for ACTA A2 mutations: A case report. Interventional Neuroradiology doi: 10.1177/1591019918765239. [Epub ahead of print].
Tallapaka K, Venugopal V, Dalal A, Aggarwal S (2018). Novel RSPO1 mutation causing 46,XX testicular disorder of sex development with palmoplantar keratoderma: A review of literature and expansion of clinical phenotype. American Journal of Medical Genetics Part A American Journal of Medical Genetics Part A 176(4), 1006-1010.
Gaucher Disease Task Force, Puri RD, Kapoor S, Kishnani PS, Dalal A, Gupta N, Muranjan M, Phadke SR, Sachdeva A, Verma IC, Mistry PK (2018). Diagnosis and Management of Gaucher Disease in India - Consensus Guidelines of the Gaucher Disease Task Force of the Society for Indian Academy of Medical Genetics and the Indian Academy of Pediatrics. Indian Pediatrics 55(2), 143-153.
Rasheed, M., Battu A. and Kaur, R. (2018) Aspartyl proteases in Candida glabrata are required for suppression of the host innate immune response. Journal of Biological Chemistry 293: 6410-33.
Raju Kumar, Viswakalyan Kotapalli, Ashmala Naz, Swarnalata Gowrishankar, Satish Rao, Jonathan R Pollack, and Murali Dharan Bashyam. XPNPEP3 is a novel transcriptional target of canonical Wnt/β-catenin signalling. Genes Chromosomes Cancer, 2018; 57:304-310.
Kar A, Phadke SR, Das Bhowmik A, Dalal A (2018). Whole exome sequencing reveals a mutation in ARMC9 as a cause of mental retardation, ptosis, and polydactyly. American Journal of Medical Genetics Part A 176(1), 34-40.
Narayanan DL, Deshpande D, Das Bhowmik A, Varma DR, Dalal A (2018). Familial choreoathetosis due to novel heterozygous mutation in PDE10A. American Journal of Medical Genetics Part A 176(1), 146-150.
Das Bhowmik A, Salem Ramakumaran V, Dalal A (2018). Tarsal-carpal coalition syndrome: Report of a novel missense mutation in NOG gene and phenotypic delineation. American Journal of Medical Genetics Part A 176(1), 219-224.
Himabindu, P, and Anupama K* 2017 Decreased expression of stable RNA can alleviate the lethality associated with RNase E deficiency in Escherichia coli. J Bacteriol 199: e00724-16
Verma N, Manna SK.* (2017) AGE potentiates cell death in p53 negative cells via upregulaion of NF-kappaB and impairment of autophagy. Journal of Cellular Physiology 232(12): 3598-3610.
K. Dolasia, M. K. Bisht, G. Pradhan, A. Udgata & S. Mukhopadhyay (2017). TLRs/NLRs: Shaping the landscape of host immunity. International Reviews of Immunology. doi:10.1080/08830185.2017. 1397656.
Ananga Ghosh, Amrita Sengupta, Guru Pavan Kumar Seerapu, Ali Nakhi, E. V. Venkat Shivaji Ramarao, Navneet Bung, Gopalakrishnan Bulusu, Manojit Pal and Devyani Haldar. A novel SIRT1 inhibitor, 4bb induces p53-dependent apoptosis in HCT116 human colon carcinoma cells. (2017) Biochem. Biophys. Res. Commun. 488(3):562.
Aggarwal S, Tandon A, Das Bhowmik A, Jain SJ, Dalal A. Autopsy findings in EPG5-related Vici syndrome with antenatal onset: Additional report of Focal cortical microdysgenesis in a second trimester fetus. American Journal of Medical Genetics Part A 2017 Dec 11. doi: 10.1002/ajmg.a.38575.
Shukla A, Das Bhowmik A, Hebbar M, Rajagopal KV, Girisha KM, Gupta N, Dalal A. Homozygosity for a nonsense variant in AIMP2 is associated with a progressive neurodevelopmental disorder with microcephaly, seizures and spastic quadriparesis. Journal of Human Genetics 2017 Nov 16. doi: 10.1038/s10038-017-0363-1.
Das Bhowmik A, Tallapaka KB, MeghaHarke, Dalal A. Targeted next generation sequencing reveals novel splice site mutations in COL6A3 gene in a patient with congenital muscular dystrophy. Neurology India 2017, (accepted).
Das Bhowmik A, Dalal A. Exome Data Analysis for Clinicians: How & Why (2017). Genetic Clinics 10(2), 5-10.
Tallapaka KB, Ranganath P, Dalal A. Variable Expressivity and Response to Bisphosphonate Therapy in a Family with Osteoporosis Pseudoglioma Syndrome (2017). Indian Pediatrics 54(8), 681-683.
Francis F, Bhat V, Balachander B, Khare C, Bethou A, Dalal A, Ponnala R (2017). Look Up to Diagnose Down! Indian Journal of Pediatrics 84(12), 961-962.
Alber M, Kalscheuer VM, Marco E, Sherr E, Lesca G, Till M, Gradek G, Wiesener A, Korenke C, Mercier S, Becker F, Yamamoto T, Scherer SW, Marshall CR, Walker S, Dutta UR, Dalal AB, Suckow V, Jamali P, Kahrizi K, Najmabadi H, Minassian BA (2017). ARHGEF9 disease: Phenotype clarification and genotype-phenotype correlation. Neurology Genetics 3(3), e148.
Harms FL, Girisha KM, Hardigan AA, Kortüm F, Shukla A, Alawi M, Dalal A, Brady L, Tarnopolsky M, Bird LM, Ceulemans S, Bebin M, Bowling KM, Hiatt SM, Lose EJ, Primiano M, Chung WK, Juusola J, Akdemir ZC, Bainbridge M, Charng WL, Drummond-Borg M, Eldomery MK, El-Hattab AW, Saleh MA, Bézieau S, Cogné B, Isidor B, Küry S, Lupski JR, Myers RM, Cooper GM, Kutsche K. Mutations in EBF3 Disturb Transcriptional Profiles and Cause Intellectual Disability, Ataxia, and Facial Dysmorphism. Am J Hum Genet. 2017 Jan 5;100(1):117-127.
Uttarilli A, Pasumarthi D, Ranganath P, Dalal AB (2017). Functional characterization of arylsulfatase B mutations in Indian patients with Maroteaux-Lamy syndrome (mucopolysaccharidosis type VI). Gene 599, 19-27.
Das Bhowmik A, Gupta N, Dalal A, Kabra M (2016). Whole exome sequencing identifies a homozygous nonsense variation in ALMS1 gene in a patient with syndromic obesity. Obesity Research & Clinical 11(2), 241-246.
Risha Khandelwal, Rashmi Sipani, Sriivatsan Govinda Rajan, Raviranjan Kumar, Rohit Joshi. (2017). Combinatorial action of Grainyhead, Extradenticle and Notch in regulating Hox mediated apoptosis in Drosophila larval CNS. PLoS Genet. 2017 Oct 12;13(10):e1007043.
Raviranjan Kumar, Maheshvari Chotaliya, Sruthakeerthi Vuppala, Ankush Auradkar, Kalyani Palasamudrum, Rohit Joshi. (2015). Role of Homothorax in region specific regulation of Deformed in embryonic neuroblasts. Mech Dev. 2015 Nov;138 Pt 2:190-7.
Javvadi, S., Pandey S.S., Mishra, A., Pradhan, B.B., and Chatterjee S. (2017). Bacterial cyclic β-(1,2)-glucans sequester iron to protect against iron-induced toxicity. EMBO Reports
Pandey S.S, Patnana,P.K, Rai S, Chatterjee S. (2017) Xanthoferrin, the α-hydroxy carboxylate type siderophore of Xanthomonas campestris pv. campestris is required for optimum virulence and growth inside cabbage. Molecular Plant Pathology 18:949-962
Pandey S.S., Singh, P., Samal B., Verma RK., and Chatterjee S. (2017). Xanthoferrin Siderophore Estimation from the Cell-free Culture Supernatant of Different Xanthomonas Strains by HPLC. Bio-protocol 17: DOI:10.21769/BioProtoc.2410
Mitra, P., Ghosh, G., Hafeezunnisa, M. and Sen, R. (2017). Rho protein: mechanism and action. Annual Review of Microbiology, 71, 687-709.
Sarkar A and Nandineni MR.Association of common genetic variants with human skin colour variation in Indian populations. American Journal of Human Biology (2017) Oct 6. doi: 10.1002/ajhb.23068.
Sarkar A, Stoneking M and Nandineni MR. Unraveling the human salivary microbiome diversity in Indian populations. (2017) PLoS ONE 12(9):e0184515.
Rao S and Nandineni MR. Genome and transcriptome analyses of chilli anthracnose fungus Colletotrichum truncatumreveal unique repertoire of pathogenicity genes. (2017) PLoS ONE 12(8):e0183567.
Zafar Ullah Zargar, Mallikharjuna Kimidi and Shweta Tyagi (2017). Dynamic site-specific recruitment of RBP2 by pocket protein p130 modulates H3K4 methylation on E2F-responsive promoters. Nucleic Acids Res. (In press)
Aamir Ali, Sailaja Naga Veeranki, Akash Chinchole and Shweta Tyagi (2017) MLL/WDR5 complex regulates Kif2A localization to ensure chromosome congression and proper spindle assembly during mitosis. Developmental Cell. 41(6) 605-622.
Chakraborty S, Shukla S, Arunkumar KP, Nagaraju J and Gadagkar R (2017) Genetic relatedness does not predict the queen’s successor in the primitively eusocial wasp, Ropalidia marginata. Journal of Genetics (In press).
R Kumar, R Raman, V Kotappali, S Gowrishankar, S Pyne, JR Pollack, M Bashyam. Ca2+/Nuclear Factor of Activated T cells signaling is enriched in early-onset rectal tumors devoid of canonical Wnt activation. J Mol Med, 2018; 96:135-146.
Malla A.B. and Bhandari R. IP6K1 is essential for chromatoid body formation and temporal regulation of TNP2 and PRM2 expression in mouse spermatids. Journal of Cell Science(2017) 130, 2854-2866. (Cover image)
R Kumar and MD Bashyam. Multiple oncogenic roles of nuclear beta catenin. J Biosciences, 2017; 42:695-707.
P.R. Abraham, N. Pathak, G. Pradhan , G. Sumanlatha and S. Mukhopadhyay (2017). The N-terminal domain of Mycobacterium tuberculosis PPE17 (Rv1168c) protein plays a dominant role in inducing antibody responses in active TB patients. PLoS One 26: e0179965.
S. Mukhopadhyay and S. Ghosh (2017). Mycobacterium tuberculosis: what is the role of PPE2 during infection? Future Microbiology 12: 457-460. doi: 10.2217 (Invited Editorial Article).
K.H. Bhat , S. Srivastava , S.K. Kotturu , S. Ghosh and S. Mukhopadhyay (2017). The PPE2 protein of Mycobacterium tuberculosis translocates to host nucleus and inhibits nitric oxide production. Scientific Reports 7:39706.
R. N. Rao, R. Shrivastava, G. Pradhan, P. Singh and S. Mukhopadhyay (2017). Phagosome lysosome Fusion Hijack - An Art of Intracellular Pathogens. Proceedings of the Indian Academy of Science doi: 10.16943/ptinsa/2017/48971
Parveen Kumar, Prathyusha Munnangi, KVS Rammohan Chowdary, Varun Jayeshkumar Shah, Swapnil R Shinde, Nanci R Kolli, Rachita R Halehalli, Hampapathalu Adimurthy Nagarajaram, and Subbareddy Maddika (2017) A human tyrosine phosphatase interactome mapped by proteomic profiling J. Proteome Res., DOI: 10.1021/acs.jproteome.7b00065 (Accepted)
Gangula NR, Maddika S (2017). Interplay between the phosphatase PHLPP1 and an E3 ligase RNF41 stimulates proper kinetochore assembly via the outer-kinetochore protein SGT1. J Biol Chem. (In press)
Kumar P, Munnangi P, Chowdary KR, Shah VJ, Shinde SR, Kolli NR, Halehalli RR, Nagarajaram HA, Maddika S (2017). A human tyrosine phosphatase interactome mapped by proteomic profiling. J Proteome Res. (In press)
"Interplay between the phosphatase PHLPP1 and an E3 ligase RNF41 stimulates proper kinetochore assembly via the outer-kinetochore protein SGT1" Author(s): Narmadha Reddy Gangula & Subbareddy Maddika
Saranathan R, Sudhakar P, Tomar A, Madhangi M, Suresh S, Satti A, Arunkumar KP and Prashanth K (2017) Disruption of tetR regulator adeN by mobile genetic element confers elevated virulence in Acinetobacter baumannii. Virulence (In press).
Guo H, Cheng T, Chen Z, Jiang L, Guo Y, Liu J, Li S, Taniai K, Asaoka K, Kadono-Okuda K, Arunkumar KP, et al., (2017) Expression map of a complete set of gustatory receptor genes in chemosensory organs of Bombyx mori. Insect Biochemistry and Molecular Biology 82: 74-82.
Pathania A, Gupta A, Dubey S, Gopal B, Sardesai AA. (2016) The topology of the L-arginine exporter ArgO conforms to an Nin-Cout configuration in Escherichia coli: Requirement for the cytoplasmic N-terminal domain, functional helical interactions and an aspartate pair for ArgO function. J. Bacteriol.198(23):3186-3199.
Takada, H., Shimada, T., Dey, D, Quyuum, MZ, Nakano, N., I Ishiguro, A., Yoshida, A., Yamamoto, K., Sen, R. and Ishihama, A.(2016) *Differential regulation of rRNA and tRNA transcription from the rRNA-tRNA composite operon in Escherichia coli. Plos one. Dec 22; 11(12):e0163057.
Vishalini, V., Agarawal, S. and Sen, R. (2016). Molecular basis of NusG-mediated regulation of Rho-dependent transcription termination in bacteria. Journal of Biological Chemistry. 291 (43), 22386–22403
Qayyum M. Z., Dey D. and Sen, R. (2016). Transcription elongation factor NusA is a negative regulator of Rho-dependent termination. Journal of Biological Chemistry, 291(15), 8090-8108.
Shinde SR, Maddika S (2016). PTEN modulates EGFR late endocytic trafficking and degradation by dephosphorylating Rab7. Nature Commun., 7:10689.
Raychaudhuri K, Chaudhary N, Gurjar M, D'Souza R, Limzerwala J, Maddika S, Dalal SN (2016). 14-3-3. Gene Loss Leads to Activation of the Epithelial to Mesenchymal Transition Due to the Stabilization of c-Jun Protein. J Biol Chem. 291(31):16068-81.
Joshi K, Shah VJ, Maddika S (2016). GINS complex protein Sld5 recruits SIK1 to activate MCM helicase during DNA replication. Cell Signal., 28(12): 1852-1862.
Das Bhowmik A, Dalal A, Matta D, Kandadai RM, Kannan M, Aggarwal S (2016). Identification of a novel splice site HSPG2 mutation and prenatal diagnosis in Schwartz Jampel Syndrome type 1 using whole exome sequencing. Neuromuscular Disorders 26(11), 809-814.
Hebbar M, Lashkari HP, Bhowmik AD, Trujillano D, Shukla A, Kandaswamy KK, Chakraborti S, Rolfs A, Kamath N, Dalal A, Bielas S, Girisha KM (2016). Homozygous deletion of exons 2 and 3 of NPC2 gene causes Niemann-Pick Disease Type C. American Journal of Medical Genetics Part A 170(9), 2486-9.
Aggarwal S*, Das Bhowmik A*, Ramprasad VL, Murugan S, Dalal A (2016). A splice site mutation in HERC1 leads to syndromic intellectual disability with macrocephaly and facial dysmorphism: Further delineation of the phenotypic spectrum. American Journal of Medical Genetics Part A 170(7):1868-73. * Equally contributed.
Phadke SR, Kar A, Bhowmik AD, Dalal A (2016). Complex Camptosynpolydactyly and Mesoaxial Synostotic Syndactyly with Phalangeal Reduction are allelic disorders. American Journal of Medical Genetics Part A 170(6), 1622-5.
Bhowmik AD, Dalal A, Matta D, Sundaram C, Aggarwal S (2016). Targeted next generation sequencing identifies a novel deletion in LAMA2 gene in a merosin deficient congenital muscular dystrophy patient. Indian Journal of Pediatrics 83(4), 354-355.
Pandey SS, Patnana PK, Lomada SK, Tomar A, and Chatterjee S.(2016). Co-regulation of iron metabolism and virulence associated functions by iron and XibR, a novel iron binding transcription factor, in the plant pathogen Xanthomonas. PLOS Pathogens 12(11): e1006019. doi:10.1371/journal.ppat.1006019
Sharma, V., Purushotham, R. and Kaur, R. (2016) The phosphoinositide 3-kinase regulates retrograde trafficking of the iron permease CgFtr1 and iron homeostasis in Candida glabrata. Journal of Biological Chemistry 291:24715-34.
Chanduri M., Rai A., Malla A.B., Wu M., Fiedler D., Mallik R. and Bhandari R. Inositol hexakisphosphate kinase 1 (IP6K1) activity is required for cytoplasmic dynein-driven transport. Biochemical Journal (2016) 473, 3031-3047.
Jadav R.S., Kumar D., Buwa N., Ganguli S., Thampatty S.R., Balasubramanian N. and Bhandari R. Deletion of inositol hexakisphosphate kinase 1 (IP6K1) reduces cell migration and invasion, conferring protection from aerodigestive tract carcinoma in mice. Cellular Signalling (2016) 28, 1124-1136.
Gujjula, R.,¶ Veeraiah, S.,¶ Kumar, K., Thakur, S.S., Mishra, K.,* and Kaur, R.* Identification of components of the SUMOylation machinery in Candida glabrata: role of the deSUMOylation peptidase CgUlp2 in virulence. Journal of Biological Chemistry 291:19573-89. ¶Equal contribution; *Corresponding authors.
Khandelwal, N.K., Kaemmer, P., Förster, T.M., Singh, A., Coste, A.T., Andes, D.R., Hube, B., Sanglard, D., Chauhan, N., Kaur, R., d'Enfert, C., Mondal, A.K. and Prasad R. (2016) Pleiotropic effects of the vacuolar ABC transporter MLT1 of Candida albicans on cell function and virulence. Biochemical Journal 473:1537-52.
S.S Pandey, P. Patnana, R. Rai, S. Chatterjee. (2016). Xanthoferrin, the a-hydroxy carboxylate type siderophore of Xanthomonas campestris pv. campestris is required for optimum virulence and growth inside cabbage. Molecular Plant Pathology (In press)
AK Chaudhary, HV Sankar and MD Bashyam. A novel large deletion that encompasses EDA and the downstream gene AWAT2 causes X-linked hypohidrotic/anhidrotic ectodermal dysplasia. Journal of Dermatological Science, 2016; 84:105-107.
Manjari Kiran and H.A.Nagarajaram (2016) Interaction and Localization Diversities of Global and Local Hubs in Human Protein‐Protein Interaction Network Molecular Biosystems 12, 2875 - 2882
A. Udgata, R. Qureshi and S. Mukhopadhyay (2016). Transduction of functionally contrasting signals by two mycobacterial PPE proteins downstream of TLR2 receptors. Journal of Immunology 197(5):1776-1787.
Parul Singh, Rameshwaram Nagender Rao, Jala Ram Chandra Reddy, RBN Prasad, Sandeep Kumar Kotturu, Sudip Ghosh & Sangita Mukhopadhyay (2016). PE11, a PE/PPE family proteinof Mycobacterium tuberculosis is involved in cell wall remodeling and virulence. Scientific Reports, 6:21624. doi: 10.1038/srep21624.
P. R. Abraham, A. Udgata, G. S. Latha, and S. Mukhopadhyay (2016). The Mycobacterium tuberculosis PPE protein Rv1168c induces stronger B cell response than Rv0256c in active TB patients. Infection Genetics and Evolution, 40:339-345.
Nazir A and Harinarayanan R (2016). (p)ppGpp and the bacterial cell cycle. J. Biosci. 41: 277-282.
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Anusha Uttarilli, Prajnya Ranganath, S. Jamal Md Nurul Jain1, Krishna Prasad, Anupam Sinha, Ishwar C Verma, Shubha R Phadke, Ratna D Puri, Sumita Danda, Mamta N Muranjan, Ganesh Jevalikar, H A Nagarajaram, Ashwin B Dalal (2014) Novel mutations of the ARSB gene in Indian patients with Mucopolysaccharidosis Type VI Indian J. Med. Res. 142, 414-425
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K. H. Bhat, A. Das, A. Srikantam and S. Mukhopadhyay (2013) PPE2 protein of Mycobacterium tuberculosis inhibits production of nitric oxide in activated macrophages. Annals of the New York Academy of Sciences 1283:97-101.
N. Parveen, R. Varman, S. Nair, G. Das, S Ghosh and S. Mukhopadhyay (2013). Endocytosis of Mycobacterium tuberculosis heat shock protein 60 is required to induce interleukin-10 production in macrophages. Journal of Biological Chemistry 288:24956-24971.
Sarkar P, Sardesai AA, Murakami KS and Chatterji D (2013). Inactivation of the bacterial RNA polymerase due to acquisition of secondary structure by the ω subunit. Journal of Biological Chemistry 288:25076-25087.
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Bairwa, G., Sriram, B., and Kaur, R. (2013) Aspartyl proteases in human pathogenic fungi: roles in physiology and virulence. In: The Fungal Cell Wall, Edited by Héctor M. Mora-Montes, Nova Science Publishers. Pages: 159-198.
Kaur, R. (2013) Review of: Annual Review of Microbiology, 2012. Edited by Susan Gottesman, Caroline S. Harwood and Olaf Schneewind. Current Science 105: 390-391.
Mishra, S., Mohan, S., Godavarthi, S. and Sen, R. (2013). The interaction surface of a bacterial transcription elongation factor required for complex formation with an antiterminator during transcription antitermination. Journal of Biological Chemistry, 288 (39), 28089–28103
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Murali D Bashyam and Ratheesh Raman. Molecular origins of colon and rectal cancer: not a Wnt-Wnt situation. Current colorectal cancer reports. 2013; 9:365-371.
Bairwa, G., Rasheed, M., Taigwal, R., Sahoo, R. and Kaur, R. (2013) Glycosylphosphatidylinositol (GPI)-linked aspartyl proteases regulate vacuole homeostasis in Candida glabrata. Biochemical J (In press).
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Sridhar Kavela, Swapnil R. Shinde, Raman Ratheesh, Kotapalli Viswakalyan, Murali Bashyam, Swarnalata Gowrishankar, Mohana Vamsy, Sujith Pattnaik, Subramanyeshwar Rao, Regulagadda Sastry, Mukta Srinivasulu, Junjie Chen, Maddika S Reddy. PNUTS functions as a proto-oncogene by sequestering PTEN. Cancer research. 2013; 73:205-214.
Manjari Kiran and H.A.Nagarajaram (2013) Global versus local hubs in human protein-protein interaction network J.Proteome Res. 12: 5436.5446
Ramaswamy Pandilla, Viswakalyan Kotapalli, Swarnalata Gowrishankar, MohanaVamsy Chigurupati, Sujith Patnaik, Shantveer Uppin, Subramanyeshwar Rao, NarasimhaRaju Kalidindi, Sastry Regulagadda, Challa Sundaram, Mukta Srinivasulu, Anjayneyulu Vasala, and Murali Dharan Bashyam. Distinct genetic aberrations in esophageal adeno and squamous carcinoma. Eur J Clin Invest; 2013; 43 (12): 1233-1239
Nagasowjanya, T., Kranthi Raj, B., Sreethi Reddy, K., and Kasbekar, D. P. (2013) An apparent increase in meiotic silencing strength in crosses involving inbred Neurospora crassa strains. Fungal Genet. Biol. (in press).
Kasbekar, D. P. (2013) Neurospora Duplications, and Genome Defense by RIP and Meiotic Silencing. In : Neurospora: Genomics and Molecular Biology. Edited by D. P. Kasbekar and K. McCluskey Caister Academic Press, Norfolk, UK. Pages 109-127.
Kiran S, Chatterjee N, Singh S, Kaul SC, Wadhwa R, Ramakrishna G. Intracellular distribution of human SIRT7 and mapping of the nucle(ol)ar localization signal. FEBS J. 2013 May 17. doi: 10.1111/febs.12346. [Epub ahead of print]
Md Khursheed, Jayaprakash N Kolla, Viswakalyan Kotapalli, Neha Gupta, Swarnalata Gowrishankar, Shantveer G Uppin, Regulagadda Sastry, Suman Koganti, Challa Sundaram, Jonathan R Pollack, Murali D Bashyam. ARID1B, a member of the human SWI/SNF chromatin remodeling complex, exhibits tumor suppressor activities in pancreatic cancer cell lines. British journal of cancer, 2013; 108:2056-2062.
Usha R Dutta, Vijaya Kumar Pidugu, Ch Venkateshwar Goud, Christiane Hoefers, Monika Hagemann and Ashwin Dalal (2013). Identification and Molecular Cytogenetic Characterization of a novel complex Y chromosome rearrangement in a boy with disorder of sexual development. GENE 519; 374-380.
Beaulieu ED, Ionescu M, Chatterjee S, Yokota K, Trauner D, Lindow S. (2013). Characterization of a Diffusible Signaling Factor (DSF) from Xylella fastidiosa. Mbio. Vol. 4: e00539-12.
Chatterjee S., PandeyA. (2013). Signaling in plant-microbe interactions. Plant stress Vol. 7: 52-59.
Pradhan BB, Ranjan M, Chatterjee S. (2012). XadM, a novel adhesin of Xanthomonas oryzae pv. oryzae, exhibits similarity to Rhs family proteins and is required for optimum attachment, biofilm formation and virulence. Molecular Plant-Microbe Interactions . Vol. 25: 1157-1170.
Anupam Sinha and H.A.Nagarajaram (2013) Effect of Alternative Splicing on the Degree Centrality of nodes in PPI networks of Homo sapiens J.Proteome Res. 12:1980-1988
Vishal Acharya and H.A.Nagarajaram (2013) Response to: Statistical Analysis of Missense Mutation Classifiers Human Mutat 34 407
Muley VY, Ranjan A (2013) Evaluation of Physical and Functional Protein-Protein Interaction Prediction Methods for Detecting Biological Pathways PLOS ONE 10.1371/journal.pone.0054325
Siddiq EA, Vemireddy LR and Nagaraju J (2012) Basmati rices: genetics, breeding and trade. Agricultural Research 1: 25-36.
Sinha DK, Nagaraju J, Tomar A, Bentur JS and Nair S (2012) Pyrosequencing-based transcriptome analysis of the Asian Rice Gall Midge reveals differential response during compatible and incompatible interaction. International Journal of Molecular Science 13:13079-13103.
K. H. Bhat, A. Ahmed, S. Kumar, P. Sharma and S. Mukhopadhyay (2012). Role of PPE18 protein in intracellular survival and pathogenicity of Mycobacterium tuberculosis in mice. PLoS ONE 7:e52601.
Gowrishankar, J., Krishna Leela, J., and Anupama, K. 2012. R-loops in bacterial transcription: Their causes and consequences. Transcription 4: 153.157.
Krishna Leela, J., Syeda, A.H., Anupama, K., and J. Gowrishankar. 2012. Rho-dependent transcription termination is essential to prevent excessive genome-wide R-loops in Escherichia coli. Proc Natl Acad Sci USA 110: 258-263.
Marbaniang, C.N., and J. Gowrishankar. 2012. Transcriptional Cross-Regulation between Gram-Negative and Gram-Positive Bacteria, Demonstrated Using ArgP-argO of Escherichia coli and LysG-lysE of Corynebacterium glutamicum. J Bacteriol. 194: 5657.5666.
Vijaya kumar Pidugu and Usha R Dutta (2012): Fluorescence in .situ Hybridization: Technology and its application in Molecular Medicine. Journal of Cytology and Genetics, 13, 1-8.
Usha R Dutta, Vijaya kumar P, Ashwin B Dalal. (2012): Molecular and Cytogenetic Characterization of Two Patients with Recurrent miscarriages and X-Autosome Translocation. Journal of Research in Medical Sciences 17; 572-4.
Vineeth VS, Suttur S Malini, Sreenivasa G, Usha R Dutta. (2012): High incidence of sperm dysfunction in a varicocele infertile man: case report. Asia Pacific Journal of Reproduction, vol (1), Number 1, March; 61- 64.
Muley VY, Ranjan A (2012) Effect of reference genome selection on the performance of computational methods for genome-wide protein-protein interaction prediction.PLoS One.7(7):e42057.
Ali J, Thummala SR, Ranjan A (2012) The parasite specific substitution matrices improve the annotation of apicomplexan proteins. BMC Genomics.13 Suppl 7:S19.
Rai, M.N., Balusu, S., Goritala, N., Lakshmi, D., and Kaur, R. (2012) Functional genomic analysis of Candida glabrata-macrophage interaction. Role of chromatin remodeling in virulence. PLoS Pathog. 8: e1002863.
Borah, S., Raju, S. and Kaur, R. (2011) The Rho1 GTPase-activating protein CgBem2 is required for survival of azole stress in Candida glabrata. Journal of Biological Chemistry 286: 34311-34324.
Bairwa, G., Balusu, S., and Kaur, R. (2012) Aspartyl proteases in human pathogenic fungi: roles in physiology and virulence in the book entitled "The Fungal Cell Wall", Ed. Héctor M. Mora-Montes, Nova Science Publishers (In press).
Jadav R.S., Chanduri M.V.L., Sengupta S. and Bhandari R. Inositol Pyrophosphate Synthesis by Inositol Hexakisphosphate Kinase 1 is Required for Homologous Recombination Repair J. Biol. Chem. (2012) doi:10.1074/jbc.M112.396556
Banerjee, R., Nath, S., Ranjan, A., Khamrui, K., Pani, B. Sen, R. and Sen , U. (2012). The first structure of Polarity Suppression protein, Psu from Enterobacteria phage P4, reveals a novel fold and a knotted dimer. Journal of Biological Chemistry. 44667-44675.
Muteeb, G., Dey, D., Mishra, S. and Sen, R. (2012). A multi-pronged strategy by an antiterminator to overcome Rho-dependent termination. Nucleic Acids Research, 40(22), 11213-11228.
Shashni, R., Mishra, S., Kalayani, B. S. and Sen. R. (2012). Suppression of in vivo Rho-dependent transcription termination defects: evidence for kinetically controlled steps. Microbiology, 158:1468 - 1481.
Ramakrishna G, Anwar T, Angara RK, Chatterjee N, Kiran S, Singh S. (2012) Role of cellular senescence in hepatic wound healing and carcinogenesis. European Journal of Cell Biology, 91 (10),739-747.
Y. Akhter, M. T. Ehebauer, S. Mukhopadhyay, and S. E. Hasnain (2012). The PE/PPE multigene family codes for virulence factors and is a possible source of mycobacterial antigenic variation: perhaps more? Biochimie. 94: 110-116.
Suresh B. Mudunuri, Priyatosh Mishra, and Nagarajaram, H.A. (2012) In Silico Survey of Distribution and Frequency of Imperfect Microsatellite Repeats in Viral Genomes. Proceedings of IEEE International Conference on Data Science & Engineering (ICDSE 2012), Vol. 1, pp. 31-36 (http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6282303)
Patil SJ, Bhat V, Dalal A, Santosh JS. Confirmation of the Zechi-Ceide syndrome. Am J Med Genet A. 2012;158A(6):1467-71
Angalena R, Aggarwal S, Phadke SR, Dalal A. Compound heterozygote condition in beta thalassemia major due to a novel single nucleotide deletion (-T) at codon 69 in association with IVS 1-5 (G>C) mutation. Int J Lab Hematol. 2012 Mar 12 [Epub ahead of print].
Ponnala R, Ranganath P, Dutta UR, Pidugu VK, Dalal AB. Phenotypic and molecular characterization of partial trisomy 2q resulting from insertion-duplication in chromosome 18q: a case report and review of literature. Cytogenet Genome Res. 2012;136(3):229-34.
Muranjan M, Agarwal S, Lahiri K, Bashyam M. Novel biochemical abnormalities and genotype in farber disease. Indian Pediatr. 2012 Apr 8;49(4):320-2.
Pradhan BB, Ranjan M, Chatterjee S. (2012). XadM, a novel adhesin of Xanthomonas oryzae pv. oryzae, exhibits similarity to Rhs family proteins and is required for optimum attachment, biofilm formation and virulence. Molecular Plant-Microbe Interaction .[Pub. ahead of Print. http://dx.doi.org/10.1094/MPMI-02-12-0049-R. posted 05/09/2012]
Murali D Bashyam, Ajay K Chaudhary, Manjari Sinha, H A Nagarajaram, A Radha Rama Devi, Leena Bashyam, E Chandrakanth Reddy, Ashwin Dalal (2012). Molecular genetic analysis of MSUD from India reveals mutations causing altered protein truncation affecting the C-termini of E1α and E1β. Journal of Cellular Biochemistry 113:3122-3132
Bhat KH, Chaytanya CK, Parveen N, Varman R, Ghosh S, Mukhopadhyay S. The PPE protein Rv1168c of Mycobacterium tuberculosis augments transcription from HIV-1 LTR promoter.J Biol Chem. 2012 Mar 15. [Epub ahead of print].
M D Bashyam, A K Chaudhary, E C Reddy, V Reddy, V Acharya, H A Nagarajaram, A R R Devi, L Bashyam, A B Dalal, N Gupta, M Kabra, M Agarwal, S R Phadke, R Tainwala, R Kumar, S V Hariharan. A founder ectodysplasin A receptor (EDAR) founder mutation results in a high frequency of the autosomal recessive form of Hypohidrotic Ectodermal Dysplasia in India. Br J Dermatol.2012; 166:819-829.
Murali Dharan Bashyam, Ajay K Chaudhary, Vijay Bhat. The IVS2+837T>G appears to be a relatively common 'rare' β-GLOBIN gene mutation among β-Thalassemia patients in the South Indian state of Karnataka. Hemoglobin 2012;36(5):497-503.
Ray R, Pradhan BB, Ranjan M, Chatterjee S. (2012). Atypical regulation of virulence associated functions by a Diffusible Signal Factor in Xanthomonas oryzae pv. oryzae. Molecular Plant-Microbe Interaction. Vol.25: 789-801
Pankaj Kumar and H.A.Nagarajaram (2012) A Study on Mutational Dynamics of Simple Sequence Repeats in Relation to Mismatch Repair System in Prokaryotic Genomes J. Mol. Evol. 74 127-139
Suresh B. Mudunuri, Priyatosh Mishra and H.A. Nagarajaram (2012) "Distributional Analysis and Motif Frequencies of Compound Microsatellite Repeats in Viral Genomes.", Proceedings of IEEE International Conference on Computing, Electronics & Electrical Technologies (ICCEET), 2012, vol.1, pp.887-893, 21-22 March 2012.
Vishal Acharya and H.A.Nagarajaram (2012) Hansa: An automated method for discriminating disease and neutral human nsSNPs Hum Mutat 33 332-337
AH Shain, CP Giacomini, K Matsukuma, CA Karikari, MD Bashyam, M Hidalgo, A Maitra, JR Pollack. Convergent structural alterations define SWI/SNF chromatin remodeler as a central tumor suppressive complex in pancreatic cancer. Proc Natl Acad Sci, USA. 2012, 109:E252-E259.
Murali Bashyam, Guroji Purushotham, Ajay K Chaudhary, Madhumohan Rao, Vishal Acharya, Tabrez Mohammad, Hampapatalu Nagarajaram, Vuppaladadhiam Hariram, Calambur Narasimhan. A low prevalence of MYH7/MYBPC3 mutations among Familial Hypertrophic Cardiomyopathy patients in India. Mol Cell Biochem. 2012, 360:373-382.
Borah, S., Shivarathri, R. and Kaur, R. (2011) The Rho1 GTPase-activating protein CgBem2 is required for survival of azole stress in Candida glabrata. Journal of Biological Chemistry 286: 34311-34324.
Chatterjee N, Kiran S, Ram BM, Islam N, Ramasarma T, Ramakrishna G. Diperoxovanadate can substitute for H(2)O(2) at much lower concentration in inducing features of premature cellular senescence in mouse fibroblasts (NIH3T3). Mech Ageing Dev. 2011 May;132(5):230-9
A Radha Rama Devi, Usha R Dutta. (2012): Ring chromosome 20 associated with refractory epilepsy: case report. Asian Journal of Medical Sciences 2(2011) 141-144.
Reich D, Patterson N, Kircher M, Delfin F, Nandineni MR, et al. Denisova Admixture and the First Modern Human Dispersals into Southeast Asia and Oceania. 2011. American Journal of Human Genetics, Vol. 89(4), Oct 7, 516-528.
Ali J, Paila U, Ranjan A(2011) ApicoAlign: an alignment and sequence search tool for apicomplexan proteins. BMC Genomics 12(Suppl 3):S6.
Almeida RP, Killiny N, Newman KL, Chatterjee S, Ionescu M, Lindow S. (2011) Contribution of rpfB to Cell-cell Signal Synthesis, Virulence, and Vector Transmission of Xylella fastidiosa. Molecular Plant Microbe Interaction. Vol. 25: 453-462.
Anupama, K., Krishna Leela, J., and J. Gowrishankar. 2011. Two pathways for RNase E action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination. Mol Microbiol. 82:1330.1348.
Marbaniang, C.N., and J. Gowrishankar. 2011. Role of ArgP (IciA) in lysine-mediated repression in Escherichia coli. J Bacteriol.193: 5985-5996.
Saxena, S., and J. Gowrishankar. 2011a. Modulation of Rho-dependent transcription termination in Escherichia coli by the H-NS family of proteins. J Bacteriol. 193: 3832.3841.
Saxena, S., and J. Gowrishankar. 2011b. Compromised factor-dependent transcription termination in a nusA mutant of Escherichia coli: spectrum of termination efficiencies generated by perturbations of Rho, NusG, NusA, and H-NS family of proteins. J Bacteriol. 193: 3842.3850.
Almeida RP, Killiny N, Newman KL, Chatterjee S, Ionescu M, Lindow S. (2011) Contribution of rpfB to Cell-cell Signal Synthesis, Virulence, and Vector Transmission of Xylella fastidiosa. Molecular Plant Microbe Interaction. 2011 Dec 28. [Epub ahead of print].
Li YR, Zou HS, Che YZ, Cui YP, Guo W, Zou LF, Chatterjee S, Biddle EM, Yang CH, Chen GY. (2011) A novel regulatory role of HrpD6 in regulating hrp-hrc-hpa genes in Xanthomonas oryzae pv. oryzicola. Mol Plant Microbe Interact. 9:1086-101.
Usha R. Dutta , Vijaya Kumar Pidugu, Venkatesh Goud, Ashwin B. Dalal Mosaic Down syndrome with a marker: Molecular cytogenetic characterization of the marker chromosome. Gene. 2011 Dec 28. [Epub ahead of print] PMID:22245181 http://www.ncbi.nlm.nih.gov/pubmed/22245181
Suttur S, Malini, Vijaya Kumar Pidugu, Ashwin B. Dalal, Usha R Dutta. Evaluation of sex chromosomal anomalies in sperms among infertile males by Fluorescence in situ Hybridization. Journal of Cytology & Genetics, vol 12 (NS) 77-84(2011)
Patil SJ, Ponnala R, Shah S, Dalal A. Mosaic Trisomy 9 Presenting with Congenital Heart Disease, Facial Dysmorphism and Pigmentary Skin Lesions: Intricate Issues of Genetic Counseling. Indian J Pediatr. 2011 Oct 6. [Epub ahead of print]
Ponnala R, Dalal A. Partial monosomy 7q. Indian Pediatr. 2011 May 7;48(5):399-401.
Padma Priya T, Dalal AB. Tuberous Sclerosis: Diagnosis and Prenatal Diagnosis by MLPA. Indian J Pediatr. 2011 May 4. [Epub ahead of print]
Kumar R, Panigrahi I, Dalal A, Agarwal S. Sickle Cell Anemia-Molecular Diagnosis and Prenatal Counseling: SGPGI Experience. Indian J Pediatr. 2011 Jun 29. [Epub ahead of print]
Anupam Sinha and H.A.Nagarajaram (2011) Studies on Protein-Protein Interactions: A New Frontier in Computational Biology (key note address) in "Proceedings of 2nd International Conference on Metacomputing 15-16, Dec. 2011, Goa, India" Editor: Dr. P.K.Roy, Allied Publishers Pvt. Ltd., New Delhi.
Md. Tabrez Shamim and H A Nagarajaram (2011) A Hierarchical Approach to Protein Fold Recognition J. Integr. Bioinform. 8:185-, 2011 (online journal http://journal.imbio.de/index.php?paper_id=185)
Md. Tabrez Shamim and Nagarajaram, H.A. (2011) SVM-Based method for protein structural class prediction using secondary structural content and structural information of amino acids J.Bioinform. Comput. Biol 9: 489-502
Pankaj Kumar, P. S. Chitanya and H A Nagarajaram (2011) PSSRdb: A Relational Database of Polymorphic Simple Sequence Repeats Extracted from Prokaryotic Genomes Nucleic Acid Res. 39(suppl 1): D601-D605
Kwei KA, Shain AH, Bair R, Montgomery K, Karikari CA, van de Rijn M, Hidalgo M, Maitra A, Bashyam MD, Pollack JR. SMURF1 Amplification Promotes Invasiveness in Pancreatic Cancer. PLoS One. 2011;6(8):e23924.
Kalyani, B. S., Muteeb, G., Qayyum, M. Z. and Sen, R. (2011). Interaction with the nascent RNA is a pre-requisite for the recruitment of Rho to the transcription elongation complex in vitro. J. Mol. Biol, 413, 548-560.
Swapna, G., Chakraborty A, Kumari, V., Sen, R. and Nagaraja, V. (2011). Mutations in .' subunit of E.coli RNA polymerase perturb the activator polymerase functional interaction required for promoter clearance. Molecular Microbiology. 80(5):1169-85.
Chalissery, J., Muteeb, G., Nisha C. K., Mohan, S. Jisha, V and Sen, R. (2011). Interaction surface of the transcription terminator Rho required to form a complex with the C-terminal domain of the antiterminator NusG. Journal of Molecular Biology, 405, 49-64.
S. Mukhopadhyay**, S.Nair and S. Ghosh** (2011). Pathogenesis in tuberculosis: transcriptomicapproaches to unraveling virulence mechanisms and finding new drug targets. FEMS Microbiology Reviews (In Press)
Mahali, S., Raviprakash, N., Manna S.K.* (2011): Advanced glycation end products (AGE) induce apoptosis via a novel pathway: involvement of Ca2+ mediated by interleukin-8. Journal of Biological Chemistry http://www.jbc.org/doi/10.1074/lbc.M111.279190.
Naik, U.S., Gangadharan, C., Abbagani, K., Nagalla, B., Dasari, N., and Manna, S.K.* (2011): A study of nuclear transcription factor kappaB in childhood autism. Plos One 6: e19488.
S. Mukhopadhyay* and K. N. Balaji* (2011). The PE and PPE proteins of Mycobacterium tuberculosis. Tuberculosis (In Press)
A. Das and S. Mukhopadhyay* (2011). The evil axis of obesity, inflammation and type-2 diabetes. Endocrine, Metabolic & Immune Disorders - Drug Targets 11:23-31 (*Corresponding Author)
S. Nair, A. D. Pandey and S. Mukhopadhyay* (2011). The PPE18 protein of Mycobacterium tuberculosis inhibits NF-kB/rel-mediated proinflammatory cytokine production by upregulating and phosphorylating SOCS3 protein. Journal of Immunology 186: 5413-5424 (*Corresponding Author)
Gunnarsdóttir ED, Nandineni MR, et al. Larger mtDNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra. Nature Communications, 2011 Mar; 2:228
Usha R Dutta, Rajitha P, Vijaya kumar P, Ashwin B Dalal. (2011): Cytogenetic abnormalities in 1162 couples with recurrent miscarriages in southern region of India: report and review. Journal of Assisted Reproduction and Genetics (2) 28: 145- 148. (http://www.ncbi.nlm.nih.gov/pubmed/20931274)
Angalena R, Prabitha KN, Chaudhary AK, Bashyam MD, Jain S, Dalal AB. A novel homozygous point mutation at codon 82 (HBB:c.247A > T)) in the beta-globin gene leads to thalassemia major. Int J Lab Hematol. 2010 Oct;32(5):548-549 (http://www.ncbi.nlm.nih.gov/pubmed/20136848)
Usha R Dutta, Rajitha P, Vijaya kumar P, Ashwin B Dalal. (2011): Molecular Cytogenetics Illustrated: SKY and FISH Usha R Dutta, Vijaya Kumar Pidugu, Ashwin B Dalal, Newsletter of Genetics Chapter of Indian Academy of Pediatrics, Vol 4, Issue 1 (Jan-Mar 2011).
Järn Rüssel, Usha Dutta, Dorothea Wand, Dietmar Schlote, Ingo Hansmann. (2009): The 9p24.3 breakpoint of a constitutional t(6;9)(p12;p24) presenting in a patient with chronic lymphocytic leukemia maps close to the putative promoter region of DMRT2 gene. Cytogenetic and Genome Research 125:81-86.
Maddika S@., Kavela S., Rani M., Palicharla VR and Chen J@. WWP2 is an E3 ubiquitin ligase for PTEN. Nature Cell Biol 2011 (In press) [@Equal corresponding author].
Narendra P. Singh, Sri R. Madabhusi, Surabhi Srivastava, R. Senthilkumar, C. Neeraja, Sanjeev Khosla,* and Rakesh K. Mishra,* (2011) Epigenetic profile of the euchromatic region of human Y chromosome. Nucleic Acids Research, doi:10.1093/nar/gkq1342 * corresponding authors
Thiagarajan D, Dev RR, Khosla S (2011) The DNA methyltranferase Dnmt2 participates in RNA processing during cellular stress. Epigenetics 6:103-113.
Bairwa, G. and Kaur, R. (2011) A novel role for a glycosylphosphatidylinositol-anchored aspartyl protease, CgYps1, in the regulation of pH homeostasis in Candida glabrata. Mol. Microbiol. 79 (4): 900-913.
Yadav, A.K., Desai, P.R., Rai, M.N., Kaur, R., Ganesan, K. and Bachhawat, A.K. (2011) Glutathione biosynthesis in the yeast pathogens Candida glabrata and Candida albicans: Essential in C. glabrata, and essential for virulence in C. albicans. Microbiology 157: 484-495.
Kole, L., Giri, B., Manna S.K., Pal, B., and Ghosh, S. (2011): Biochanin-A, an isoflavon, showed anti-proliferative and anti-inflammatory activities through the inhibition of iNOS expression, p38-MAPK and ATF-2 phosphorylation and blocking NFκB nuclear translocation. European Journal of Pharmacology. 653: 8-15
Majumdar S., Dutta K., Manna S.K. Basu A., and Bishayi B. (2011): Possible protective role of chloramphenicol in TSST-1 and coagulase positive Staphylococcus aureus induced septic arthritis with altered levels of inflammatory mediators. Inflammation 34: 268-281.
Kaur, R. (2009) Review of: Lilavati’s Daughters: The Women Scientists of India, Edited by Rohini Godbole and Ram Ramaswamy, Indian Academy of Sciences, Bangalore, 2008, 369 pages. Current Science 96: 1137-38.
Subhadeep Chatterjee. 2010. Fatal attraction: bacteria exploit fungal heterokaryon incompatibility to obtain nutrients. Journal of Bioscience. Vol. 35(3): 329-330.
Subhadeep Chatterjee, Killiny S, Almeida RPP and Lindow SE. 2010. Role of Cyclic di-GMP in Xylella fastidiosa Biofilm Formation, Plant Virulence and Insect Transmission. Molecular plant- Microbe Interactions. Vol. 23(10): 1356-1363
Muteeb, G. and Sen, R. (2010). Random mutagenesis using mutator strain. Methods in Molecular Biology, 634, 411-419.
Khamurai, S., Ranjan, A., Pani, B., Sen, R. and Sen, U. (2010) Crystallization and preliminary X-Ray analysis of Psu, an inhibitor of bacterial transcription terminator, Rho. Acta Crystallogr Sect F Struct Biol Cryst Commun. 66(Pt 2), 204-6.
Nisha, C. K., Ranjan, A., Kalyani, S., Wal, M. and Sen, R. (2010). A bacterial transcription terminator with inefficient molecular motor action but with a robust transcription termination function. Journal of Molecular Biology, 395, 966-982.
Dalal AB, Sarkar A, Priya TP and Madhusudan R. Nandineni. Giuffrè-Tsukahara syndrome: Evidence for X-linked dominant inheritance and review. American Journal of Medical Genetics, A. 2010 Aug; 152A (8): 2057-60.
Madhusudan R. Nandineni, S.P.R. Prasad, Ch.V. Goud, D.S. Negi, J. Nagaraju and J. Gowrishankar. DNA-based identification of victims of the Mangalore air crash of May 2010. Current Science (2010), 99 (3): 341-342
Manderwad GP, Gokul G, Kannabiran C, Honavar SG, Khosla S, Vemuganti G (2010) Hypomethylation of the DNMT3L Promoter in Ocular Surface Squamous Neoplasia (OSSN). Archives of Pathology & Laboratory Medicine 134:1193-1196.
Suresh B Mudunuri, Pankaj Kumar, Allam Appa Rao, S Pallamsetty and H A Nagarajaram (2010) G-IMEx: A comprehensive software tool for detection of microsatellites from genome sequences Bioinformation 5: 221-223
Dalal AB, Sarkar A, Priya TP, Nandineni MR. Giuffr-Tsukahara syndrome: Evidence for X-linked dominant inheritance and review. Am J Med Genet A. 2010;152A(8):2057-60.(http://www.ncbi.nlm.nih.gov/pubmed/20635354)
Priya TP, Philip N, Molho-Pessach V, Busa T, Dalal A, Zlotogorski A. H syndrome: novel and recurrent mutations in SLC29A3. Br J Dermatol. 2010;162(5):1132-4. (http://www.ncbi.nlm.nih.gov/pubmed/20199539)
Agarwal S, Tamhankar PM, Kumar R, Dalal A. Clinical and haematological features in a compound heterozygote (HBB:c.92 + 5G > C/HBB:c.93-2A > C) case of thalassaemia major. Int J Lab Hematol. 2010;32(3):369-72. (http://onlinelibrary.wiley.com/doi/10.1111/j.1751-553X.2009.01157.x/abstract)
Girisha KM, Vahab SA, Dalal AB, Gopinath PM, Satyamoorthy K. Compound heterozygosity for HbD Punjab and polyadenylation signal mutation causes clinically asymptomatic mild hypochromia and microcytosis. Ann Hematol. 2010;89(6):625-6. (http://www.ncbi.nlm.nih.gov/pubmed/19727721)
Padma Priya T, Ashwin Dalal. Triplet Primed PCR (TP-PCR) A Versatile Method For Molecular Diagnosis Of Triplet Repeat Disorders. Newsletter of Genetics Chapter of Indian Academy of Pediatrics, Vol 3, Issue 3 (July-Sept 2010)
Werner J.K. Jr., Speed T. and Bhandari R. Protein pyrophosphorylation by diphosphoinositol pentakisphosphate (InsP7). Methods Mol Biol. (2010) 645, 87-102.
Nirmala Yabaluri* and Murali D Bashyam*. 2010. Hormonal regulation of gluconeogenic gene transcription in the liver. J Biosci 35:473-484 (in press) *shared corresponding authorship.
Bashyam MD, Chaudhary A, Reddy E, RamaDevi A, Savithri G, Ratheesh R, Bashyam L, Mahesh E, Sen D, Puri R, Verma I, Nampoothiri S, Vaidyanathan S, Chandrasekhar M, Kantheti P. 2010. Phenylalanine hydroxylase gene mutations in phenylketonuria patients from India: identification of novel mutations that affect PAH RNA. Mol Genet Metabolism 100:96-99.
Bose S , Sakhuja P, Bezawada L, Agarwal AK, Kazim SN, Khan LA, Sarin SK and Ramakrishna G (2010) Hepatocellular carcinoma with persistent hepatitis B virus infection shows unusual downregulation of Ras expression and differential response to Ras mediated signaling. Journal of Gastroenterologyand Hepatology ( In press)
N. Bashir, F. Kounsar, S. Mukhopadhyay and S. E. Hasnain (2010). Mycobacterium tuberculosis conserved hypothetical protein rRv2626c modulates macrophage effector functions. Immunology 130:34-45.
Manna S.K.*, Bose, J.S., Gangan, V., Raviprakash, N., Navneetha, T., Raghavendra, P.B., Babajan, B., Kumar, C.S., and Jain, S.K. (2010): Novel derivative of benzofuran induces cell death mostly by G2/M cell cycle arrest through p53-dependent pathway but partially by Inhibition of NF-kB. Journal of Biological Chemistry (In press).
Purushotham G, Madhumohan K, Anwaruddin M, Nagarajaram H, Hariram V, Narasimhan C, Bashyam MD. The MYH7 p.R787H mutation causes hypertrophic cardiomyopathy in two unrelated families. Exp Clin Cardiol. 2010 Spring;15(1):e1-4.
K. Alam, S. Ghousunnissa, S, Nair, V. L. Valluri and S. Mukhopadhyay* (2010). Glutathione-redox balance regulates c-rel driven IL-12 production in macrophages: possible implications in anti-tuberculosis immunotherapy. Journal of Immunology, 184:2918-2929.
Manna S.K.*, Babajan, B., Raghavendra, P. B., Raviprakash, N. and Kumar, C. S. (2010): Inhibiting TNF receptor associated factor 2-mediated activation of nuclear factor kappaB facilitates induction of activator protein-1. Journal of Biological Chemistry 285: 11617-11627.
Suresh, B.M, Rao, A.P, Mishra, P. and Nagarajaram, H.A. (2010) . Comparative Analysis of Microsatellite Detecting Software: A Significant Variation in Results and Influence of Parameters, Proceedings of International Symposium on Biocomputing, (ISB 2010), Kerala, February 15-17, 2010. (Link to ACM Digital Library)
Gokul G, Ramakrishna G, and Khosla S (2009) Reprogramming of HeLa cells upon DNMT3L overexpression mimics carcinogenesis. Epigenetics 4: 322-329.
Kumar R, Tamhankar PM, Panigrahi I, Dalal A , Agarwal S. A novel beta-globin mutation (HBB:c.107A>G; or codon 35 beta (A-->G)) at alpha-beta chain interfaces. Ann Hematol. 2009 ;88(12):1269-71. (http://www.ncbi.nlm.nih.gov/pubmed/19488752)
Ashwin Dalal. Stem cell therapy:Current status. Newsletter of Genetics Chapter of Indian Academy of Pediatrics, Vol 2, Issue 2 (Apr-Jun 2009)
Sowjanya AP, Paul P, Vedantham H, Ramakrishna G, Vidyadhari D, Vijayaraghavan K, Laksmi S, Sudula M, Ronnett BM, Das M, Shah KV, Gravitt PE; Community Access to Cervical Health Study Group. Suitability of self-collected vaginal samples for cervical cancer screening in periurban villages in Andhra Pradesh, India. Cancer Epidemiol Biomarkers Prev. 2009 May;18(5):1373-8
S. Nair, P. A. Ramaswamy, S. Ghosh, D. C. Joshi, N. Pathak, I. Siddiqui, P. Sharma, S. E. Hasnain, S. C. Mande and S. Mukhopadhyay* (2009) The PPE18 of Mycobacterium tuberculosis interacts with TLR2 and activates IL-10 induction in macro-phage. Journal of Immunology, 183:6269-6281.
Raghavendra, P.B., Pathak N., and Manna S. K.* (2009): Novel role of Thiadiazolidine derivatives in inducing cell death through Myc-Max, Akt, FKHR, and FasL pathway. Biochemical Pharmacology 78: 495-503.
Basu D, Khare G, Singh S, Tyagi A, Khosla S, Mande SC (2009) A novel nucleoid-associated protein of Mycobacterium tuberculosis is a sequence homolog of GroEL. Nucleic Acids Res. Jun 15. [Epub ahead of print]
Vinukonda Govindaiah, Shaik Mohammad Naushad, Krishnamurthy Prabhakara Prasad Chintakindi Krishna, Akella Radha Rama Devi. Association of parental hyperhomocysteinemia and C677T Methylenetetrahydrofolate reductase (MTHFR) polymorphism with recurrent pregnancy loss. Clinical Biochemistry 42 (2009) 380.386
Govindaiah Vinukonda , Naushad Shaik Mohammad , Jamal Md Nurul Jain , Krishna Prasad Chintakindi , Radha Rama Devi Akella. Genetic and environmental influences on total plasma homocysteine and coronary artery disease (CAD) risk among South Indians. Clinica Chimica Acta 405 (2009) 127.131
Mohammad, Naushad Shaik; Jain, Jamal Md Nurul; Chintakindi, Krishna Prasad; Singh, Ram Prakash; Naik, Usha; Akella, Radha Rama Devi Aberrations in folate metabolic pathway and altered susceptibility to autism Psychiatric Genetics. 19(4):171-176, August 2009.
Korupolu, R.V., Achary, M.S. , Aneesa, F., Sathish, K., Wasia, R., Sairam, M., Nagarajaram, H.A and Singh, S.S. (2009) Profilin oligomerization and its effect on poly (l-p roline) binding and phosphorylation Int. J.Biol.Macromol. (Accepted)
Suresh B. Mudunuri, Allam Appa Rao, S Pallamsetty, Priyatosh Mishra and H.A.Nagarajaram (2009) VMD: Viral Microsatellite Database - A Comprehensive Resource for All Viral Microsatellites. Journal of Computer Science and Systems Biology. 22: 283-000. doi:10.4172/jcsb.1000043: 001-004
Nonsense -mediated decay: linking a basic cellular process to human disease. Bashyam MD. Expert Rev Mol Diagn. 2009 May;9(4):299-303.
Dalal A, Mehrotra RN (2009). Hypertrichosis, hyperkeratosis and mental retardation syndrome: further delineation of phenotype. Clin Dysmorphol. ;18(2):83-4
Murali D Bashyam, Angalena R, Ajay Chaudhary, Ashwin Dalal. Hemoglobin D (Iran) masquerading as Hemoglobin E: An interesting case report. Newsletter of Genetics Chapter of Indian Academy of Pediatrics, Vol 2, Issue 1 (Jan-Mar 2009)
Senthil Kumar, Aruna Ramachandran, Seyed E Hasnain and Murali D Bashyam (2009). Octamer and heat shock elements regulate transcription from the AcMNPV polyhedrin gene promoter. Arch Virol 154:445-456
Murali D Bashyam. (2009). Studies on nonsense mediated decay reveal novel therapeutic options for genetic diseases. Recent patents on DNA & Gene Sequences 3:7-15
Achary, M.S. and Nagarajaram, H.A. (2009) Effects of Disease Causing Mutations on the Essential Motions in proteins. J. Biomol.Struct.Dyn. 26:609-624
Johny S, Chakraborty S, Gadagkar R and Nagaraju J (2009) Polymorphic microsatellite loci for primitively eusocial wasp Ropalidia marginata. Molecular Ecology Resources 9: 2203-2205.
Arunkumar KP, Mita K and Nagaraju J (2009) Silkworm Z chromosome is enriched in testis-specific genes. Genetics On line March 30: as 10.1534/genetics.108.099994
Pandey RC, Datta D, Mukerjee R, Srinivasan A, Mahalingam S, Sawaya BE. (2009). HIV-1 Vpr: a closer look at the multifunctional protein from the structural perspective. Curr . HIV Res. 7(2) :114-128.
Manna SK and Gangadharan C (2009) Decrease in RelA phosphorylation by inhibiting protein kinase A induces cell death in NF-kappaB-expressing and drug-resistant tumor cells. Molecular Immunology 46: 1340-1350.
Bose JS, Gangan V, Jain SK and Manna SK (2009) Novel caffeic acid ester derivative induces apoptosis by expressing FasL and downregulating NF-kappaB: Potentiation of cell death mediated by chemotherapeutic agents. Journal of Cellular Physiology 218: 653-662.
Bose JS, Gangan V, Jain SK and Manna SK (2009) Downregulation of inflammatory responses by novel caffeine acid ester derivative by inhibiting NF-kappaB. Journal of Clinical Immunology 29: 90-98.
Arunkumar KP, Mita K and Nagaraju J (2009) Silkworm Z chromosome is enriched in testis-specific genes. Genetics On line March 30: as 10.1534/genetics.108.099994
Johny S, Chakraborty S, Gadagkar R and Nagaraju J (2009) Polymorphic microsatellite loci for primitively eusocial wasp Ropalidia marginata. Molecular Ecology Resources 9: 2203-2205.
Pani, B., Ranjan, A. and Sen, R. (2009). Interaction surface of bacteriophage P4 protein Psu required for the complex formation with the transcription terminator Rho. Journal of Molecular Biology. 389. 647-660.
Kumar, S., Balakrishna, K., Agarwal, G. S., Merwyn, S., Rai, G. P., Batra, H. V., Sardesai, A. A., and J. Gowrishankar. 2009. Th1-type immune response to infection by pYV-cured phoP-phoQ null mutant of Yersinia pseudotuberculosis is defective in mouse model. Antonie Van Leeuwenhoek. 95 :91-100
Subhadeep Chatterjee, Rodrigo P. P. Almeida, and Steven Lindow. 2008. Living in two Worlds:The Plant and Insect Lifestyles of Xylella Fastidiosa. Annu. Rev. Phytopathol. Vol. 46:243-71.
Paila U, Kondam R, Ranjan A(2008) Genome bias influences amino acid choices: analysis of amino acid substitution and re-compilation of substitution matrices exclusive to an AT-biased genome. Nucleic Acids Res. 36 :6664-6675.
Khan N, Alam K, Mande SC, Valluri VL, Hasnain SE and Mukhopadhyay S (2008). Mycobacterium tuberculosis heat shock protein 60 modulates immune response to PPD by manipulating the surface expression of TLR2 on macrophages. Cellular Microbiology. 10: 1711-1722.
Akif Mohd, Khare G, Tyagi AK, Mande SC and Sardesai AA (2008)Functional studies on multiple thioredoxins from Mycobacterium tuberculosis. J. Bacteriol. 190: 7087- 7095.
Kumar P, Issac B, Dodson EJ, Turkenburg JP and Mande SC (2008) Crystal structure of Mycobacterium tuberculosis YefM antitoxin reveals that it is not an intrinsically unstructured protein. J. Mol. Biol. 383: 482- 493.
Hegde S, Manimaran P and Mande SC (2008) Dynamic changes in protein functional linkage networks revealed by integration with gene expression data. PLoS Comput. Biol. 4: e1000237.
Naushad SM, Jain Jamal MN, Prasad CK, Rama Devi AR (2008). Relationship between methionine synthase, methionine synthase reductase genetic polymorphisms and deep vein thrombosis among South Indians. Clin Chem Lab Med 46(1):73-79.
K Prabhakara, Damien L Bruno, Priya Padman, Suma Prasad, R Sudheer Kumar, Howard R Slater, A Radha Ramadevi (2008). Prenatal detection of deletion-duplication of chromosome 3 arising from meiotic recombination of familial pericentric inversion. Prenat Diag 28(5):466-8
Kevin A. Kwei*, Murali D. Bashyam*#, Jessica Kao, Raman Ratheesh, Edumakanti C. Reddy, Young H. Kim, Kelli Montgomery, Craig P. Giacomini, Yoon-La Choi, Sreejata Chatterjee, Collins A. Karikari, Keyan Salari, Pei Wang, Tina Hernandez-Boussard, Gowrishankar Swarnalata, Matt van de Rijn, Anirban Maitra, Jonathan R. Pollack. (2008) Genomic profiling identifies GATA6 as a candidate oncogene amplified in pancreatobiliary cancer. PLOS Genet 4:e100081 (*shared first authorship and senior authorship).
Achary, M.S. and Nagarajaram, H.A. (2008) Comparative docking studies of CYP1b1 and its PCG associated mutant forms. Journal of Biosciences. 33:699-713
Srinivasan A, Ayyavoo V, Mahalingam S, Kannan A, Boyd A, Datta D, Kalyanaraman VS, Cristillo A, Collman RG, Morellet N, Sawaya BE, Murali R. (2008) A comprehensive analysis of the naturally occurring polymorphisms in HIV-1 Vpr: potential impact on CTL epitopes. Virol J. 5:1-17
Arunkumar KP, Kifayathullah L, Nagaraju J (2008) Microsatellite markers for the Indian golden silkmoth, Antheraea assama (Saturniidae: Lepidoptera). Molecular Ecology Resources 9: 268-270.
Mrinal N and Nagaraju J (2008) Intron loss is associated with gain of function in the evolution of the gloverin family of antibacterial genes in Bombyx mori. Journal of Biological Chemistry 283: 23376-23387.
Kanginakudru S, Metta M, Jakati RD, Nagaraju J (2008) Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken. BMC Evolutionary Biology 8:174.
Arunkumar KP, Tomar A, Daimon T, Shimada T, Nagaraju J (2008) WildSilkbase: An EST database of wild silkmoths. BMC Genomics 9: 338.
Singh J and Nagaraju J (2008) In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum). Insect Molecular Biology 17: 427-436.
Komissarova, N., Velikodvorskaya, T., Sen, R. King, R. A., Banik-Maiti, S. and Weisberg, R. A. (2008). Inhibition of a Transcriptional Pause by RNA Anchoring to RNA polymerase. Molecular Cell, 31, 683-694****.
Dutta, D., Chalissery, J. and Sen, R. (2008). Transcription termination factor Rho prefers catalytically active elongation complex for releasing RNA. Journal of Biological Chemistry, 283(29), 20243-20251.
Bhandari R***, Juluri KR, Resnick AC and Snyder SH (2008) Gene deletion of inositol hexakisphosphate kinase 1 reveals inositol pyrophosphate regulation of insulin secretion, growth, and spermiogenesis. Proceedings of the National Academy of Sciences of the USA 105: 2349-2353
Draskovic P, Saiardi A, Bhandari R***, Burton A, Ilc G, Kovacevic M, Snyder SH and Podobnik M (2008) Inositol hexakisphosphate kinase products contain diphosphate and triphosphate groups. Chemistry and Biology 15: 274-286
Ponnusamy S, Alderson NL, Hama H, Bielawski J, Jiang JC, Bhandari R***, Snyder SH, Jazwinski SM and Ogretmen B (2008) Regulation of telomere length by fatty acid elongase 3 in yeast: Involvement of inositol phosphate metabolism and ku70/80 function. Journal of Biological Chemistry 283: 27514-27524
(***Work done elsewhere)
Khan N, Alam K, Nair S, Valluri VL, Murthy KJR and Mukhopadhyay S. (2008). Strong immune responses to the PPE protein Rv1168c are associated with active tuberculosis disease. Clinical and Vaccine Immunology 15:974-980
Hussain MA, Naveed SA, Sechi LA, Ranjan, Alvi A, Ahmed I, Ranjan A, Mukhopadhyay S, and Ahmed N. (2008). Isocitrate dehydrogenase of Helicobacter pylori potentially induces humoral immune response in subjects with peptic ulcer disease and gastritis. PLoS ONE. 3:e1481.
Tundup, N. Pathak, M. Ramanadham, S. Mukhopadhyay, K. J. Murthy, N. Z. Ehtesham, and S. E. Hasnain (2008). The co-operonic PE25/PPE41 protein complex of Mycobacterium tuberculosis elicits increased humoral and cell mediated immune response. PLoS ONE. 3:e3586.
Sowpati DT, Thiagarajan D, Sharma S, Sultana H, John R, Surani A, Mishra RK, Khosla S. (2008). An intronic DNA sequence within the mouse Neuronatin gene exhibits biochemical characteristics of an ICR and acts as a transcriptional activator in Drosophila.Mech Dev. 125:963-973.
Paila U, Kondam R and Ranjan A (2008) Genome bias influences amino acid choices: analysis of amino acid substitution and re-compilation of substitution matrices exclusive to an AT-biased genome. Nucleic Acids Res., 36: 6664 - 6675.
Rajesh V, Singamsetti VK, Vidya S, Gowrishankar M, Elamaran M, Tripathi J, Radhika NB, Kochar D, Ranjan A, Roy SK, and Das A.(2008) Plasmodium falciparum: genetic polymorphism in apical membrane antigen-1 gene from Indian isolates. Exp. Parasitol. 119:144-151.
Vindal V, Ashwantha Kumar E, and Ranjan A (2008) Identification of operator sites within the upstream region of the putative mce2R gene from mycobacteria. FEBS Lett. 582:1117-1122.
( Subhadeep Work done elsewhere)
Subhadeep Chatterjee ***, Karyn L. Newman, and Steven E. Lindow. 2008. Cell-cell signaling in Xylella fastidiosa suppresses movement and xylem vessel colonization in grape Molecular Plant-Microbe Interactions.Vol. 21(10): 1309-1315.
Subhadeep Chatterjee***, Rodrigo P. P. Almeida, and Steven Lindow. 2008. Living in two Worlds:The Plant and Insect Lifestyles of Xylella Fastidiosa. Annu. Rev. Phytopathol. Vol. 46:24371
Subhadeep Chatterjee***, Christina Wistrom, and Steven E. Lindow. 2008. A cell-cell signaling sensor is required for virulence and insect transmission of Xylella fastidiosa. Proc Natl Acad Sci USA. Vol.105(7), pp2670-2675.
*** (This article was highlighted in the perspective in Science Magazine - Signaling [Science Signaling 1 (21), pe23. [DOI: 10.1126/stke.121pe23])
Karyn L. Newman#, Subhadeep Chatterjee # Kimberly A. Ho, and Steven E. Lindow. 2008. Virulence of Plant Pathogenic Bacteria Attenuated by Degradation of Fatty Acid Cell-to-Cell Signaling Factors Molecular Plant-Microbe Interactions. Vol. 21(3): pp. 326-334.
(# Equal contribution first author)
Archak S, Nagaraju J (2007) Computational prediction of rice (Oryza sativa) miRNA targets. Genomics, Proteomics and Bioinformatics 5: 196-206.
Lakshminarayanareddy V, Archak S, Nagaraju J (2007) Capillary electrophoresis is essential for microsatellite marker based detection and quantification of adulteration of Basmati rice (Oryza sativa). Journal of Agriculture and Food Chemistry 55: 8112-8117.
Akhtar Y, Ahmed I, Devi SM and Ahmed N (2007). The co-evolved Helicobacter pylori and gastric cancer: Trinity of bacterial virulence, host susceptibility and lifestyle. Infectious Agents and Cancer 2:2.
Archak S, Meduri E, Kumar PS and Nagaraju J (2007) InSatDb: a microsatellite database of fully sequenced insect genomes. Nucleic Acids Research 35:D36-D39.
Khan N, Ghousunnissa S, Jegadeeswaran SM, Thiagarajan D, Hasnain SE and Mukhopadhyay S (2007) Anti-B7-1/B7-2 antibody elicits innate-effector responses in macrophages through NF-kB-dependent pathway. International Immunology 19:477-486.
Meglecz E, Anderson SJ, Bourguet D, Butcher R, Caldas A, Cassel-Lundhagen A, d'Acier AC, Dawson DA, Faure N, Fauvelot C, Franck P, Harper G, Keyghobadi N, Kluetsch C, Muthulakshmi M, Nagaraju J, Patt A, Petenian F, Silvain JF and Wilcock HR (2007) Microsatellite flanking region similarities among different loci within insect species. Insect Molecular Biology 16:175-185.
Naushad SM, Jamal NJ, Angalena R, Prasad CK, and Devi AR (2007) Hyperhomocysteinemia and the compound heterozygous state for methylene tetrahydrofolate reductase are independent risk factors for deep vein thrombosis among South Indians. Blood Coagulation & Fibrinolysis 18:113-117.
Raghavendra PB, Sreenivasan Y, and Manna S, K. (2007): Oleandrin induces apoptosis in human, but not in murine cells: dephosphorylation of Akt, expre ssion of FasL, and alteration of membrane fluidity. Mol Immunol. 44:2292-2302
Sreenu VB, Kumar P, Nagaraju J and Nagarajaram HA (2007) Simple sequence repeats in mycobacterial genomes Journal of Biosciences 32:1-15.
Vidyasagar M, Hasnain SE, Mande SC, Nagarajaram HA, Ranjan A, Acharya MS, Anwaruddin, Arun SK, Gyanrajkumar, Kumar D, Priya S, Ranjan S, Reddi BR, Seshadri J, Sravan Kumar P, Swaminathan S, Umadevi P and Vindal V (2007) BioSuite: A comprehensive bioinformatics software package (A unique industry- academia collaboration) Current Science 92:29-38.
Ahmed N, Majeed AA, Ahmed I, Hussain MA, Alvi A, Devi SM, Rizwan M, Ranjan A, Sechi LA, and Megraud F (2007) genoBASE pylori: A genotype search tool and database of human gastric pathogen Helicobacter pylori. Infection Genetics and Evolution. 7(4):463-8.
Archak S, Reddy VLN and Nagaraju J (2007) High-throughput multiplex microsatellite marker assay for detection and quantification of adulteration in Basmati rice (Oryza sativa). Electrophoresis: 28, 2396-2405
Banerjee S, Nandyala AK, Raviprasad P, Ahmed N and Hasnain SE (2007) Iron dependent Iron binding activity of Mycobacterium tuberculosis aconitase. Journal of Bacteriology. 189(11):4046-52.
M D Bashyam A RadhaRama Devi, C K Reddy and S Ranjan. 2007. Molecular genetic analysis of Hypohidrotic Ectodermal Dysplasia patients from India reveals novel mutations in the EDA and EDAR genes. Br J Dermatol 158:163-167.
Bashyam M. D. and S. E. Hasnain.; Array-based Comparative Genomic Hybdidization: applications in cancer and tuberculosis; in Bioarrays, Ed K Appasani, Humana Press, 2007,pp 107-121.
M D Bashyam, G R Savithri, M Gopikrishna, C Narasimhan. 2007. A p.R870H mutation in the beta cardiac myosin heavy chain 7 gene causes Familial Hypertrophic Cardiomyopathy in several members of an Indian family. Canad J Cardiol. 23:788-790.
Boddupalli CS, Ghosh S, Rahim SS, Nair S, Ehtesham NZ, Hasnain SE and Mukhopadhyay S (2007) Nitric oxide inhibits interleukin-12 p40 through p38 MAPK-mediated regulation of calmodulin and c-rel. Free Radical Biology and Medicine. 42: 686-697
Chalissery J, Banerjee, S, Bandey I and Ranjan Sen (2007) Transcription termination defective mutants of Rho: role of different functions of Rho in releasing RNA from the elongation complex. Journal of Molecular Biology.
Gandhe AS, Gude J and Nagaraju J (2007) Immune upregulation of novel anti-bacterial proteins from silkmoths (Lepidoptera) that resemble lysozymes but lack muramidase activity. Insect Biochemistry and Molecular Biology. 37: 655-66.
Gokul G, Gautami B, Malathi S, Sowjanya A, Poli U, Jain M, Ramakrishna G and Khosla S (2007) DNA methylation profile at the DNMT3L promoter: a potential biomarker for cervical cancer. Epigenetics.
Goyal K, Mohanty D and Mande SC (2007) PAR-3D: A server to predict protein active site residues. Nucleic Acids Research. 35: W503-505.
** Kaur R, Ma B and Cormack BP (2007) A family of aspartyl proteases is required for virulence of Candida glabrata. Proceedings of the National Academy of Sciences, USA. 104:7628-33 (*** work done from elsewhere)
Kumari G, Singhal PK, Rao MR, Mahalingam S (2007) Nuclear transport of Ras-associated tumor suppressor proteins: Different transport receptor binding specificities for arginine-rich nuclear targeting signals. Journal of Molecular Biology
Laishram RS and Gowrishankar J (2007) Environmental regulation operating at the promoter clearance step of bacterial transcription. Genes & Development.
Manna SK, Aggarwal RA, Sethi G, Aggarwal BB and Ramesh GT (2007) Morin (3,5,7,2',4'-pentahydroxyflavone) abolishes NF-kB activation induced by various carcinogens and inflammatory stimuli, leading to suppression of NF-kB-regulated gene expression and upregulation of apoptosis. Clinical Cancer Research.
Mukhopadhyay S, Nair S and Hasnain SE (2007) Nitric oxide: Friendly rivalry in tuberculosis. Current Signal Transduction Therapy : 2: 121-28
Rasheedi S, Aruna R, Nasreen ZE and Hasnain SE (2007) Biochemical characterization of Sf9 Sp family-like protein factors reveals interesting features. Archives of Virology.
Rasheedi S, Ghosh S, Suragani M, Tuteja N, Sopory SK, Hasnain, S E, Nasreen, Z E (2007) Pisum sativum Contains A Factor With Strong Homology to CIF5B. Gene.
Sailu Y, Goyal K and Mande SC (2007) Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: comparison with high-throughput experimental data. Genome Research. 17: 527- 535.
Salih B, Abasiyanik F, Ahmed N (2007). A preliminary study on the genetic profile of cag pathogenicity island and other virulent gene loci of Helicobacter pylori strains from Turkey. Infection Genetics and Evolution.
Savitri S, Aparna D, Prashanth K, Justine KP, Ahmed N, Prashan K, Das T and Hasnain S E (2007) High-resolution genome profiling differentiated Staphylococcus epidermidis strains from patients with ocular infections and normal individuals: A Pilot study. Journal of Clinical Microbiology.
Sechi LA, Ruhel A, Ahmed N, Usai D, Paccagnini D, Felis G and Zannetti S (2007) Mycobacterium avium subspecies paratuberculosis is able to infect and persist in enteric glial cells. World Journal of Gastroenterology. 13 (43):5731-5.
DGC Terrance, Thangamani A., and Varsha srivasatava. (2007) Study of DNA variation in three breeds of European rabbit. DNA and Cell Biology 26(7): 505-515.
Suresh BM and Nagarajaram HA (2007) IMEx: Imperfect Microsatellite Extractor. Bioinformatics.23: 1181-1187.
Vindal V, Ranjan S and Ranjan A (2007) In silico analysis and characterization of GntR family of regulators from Mycobacterium tuberculosis. Tuberculosis.87:242-247
Yusuf A, Smanla T and Hasnain SE (2007) Novel Biochemical Properties of a CRP/FNR Family Transcription Factor from Mycobacterium tuberculosis. International Journal of Medical Microbiology.
Cheeran, A., Kolli, N. and Sen, R. (2007). The Site of Action of the Antiterminator Protein N from the Lambdoid Phage H-19B. Journal of Biological Chemistry, 282(42), 30997-31007.
Md Tabrez A S, Moahmmad Anwaruddin and Nagarajaram H A (2007) Support vector machine based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs. Bioinformatics. 23: 3320-3327.
K. Goyal and S. C. Mande. (2007) Exploiting 3D structural templates for detection of metal-binding sites in protein structures. Proteins Struct Funct Bioinform. In press.
Sechi LA, Felis GE, Ahmed N, Paccagnini D, Usai D, Ortu S, Molicotti P, Zanetti S. (2007) Genome and transcriptome scale portrait of sigma factors in Mycobacterium avium subsp. paratuberculosis. Infect Genet Evol. 2007 Jul; 7(4):424-32.
Devi SM, Ahmed I, Francalacci P, Hussain MA, Akhter Y, Alvi A, Sechi LA, Megraud F, Ahmed N. (2007) Ancestral European roots of Helicobacter pylori in India. BMC Genomics. 20;8:184.
Duggirala A, enchappa P, Sharma S, Peeters JK, Ahmed N, Garg P, Das T, Hasnain SE (2007) High-resolution genome profiling differentiated Staphylococcus epidermidis isolated from patients with ocular infections and normal individuals. Invest Ophthalmol Vis Sci. 48(7):3239-45.
Talwar GP, Ahmed N, Saini V. (2007) The use of the name Mycobacterium w for the leprosy immunotherapeutic bacillus creates confusion with M. tuberculosis-W Beijing strain): A suggestion. Infect Genet Evol. 26; [Epub ahead of print] In Press
Ahmed N, Saini V, Raghuvanshi S, Khurana JP, Tyagi AK, Tyagi AK, Hasnain SE. Molecular analysis of a leprosy immunotherapeutic bacillus provides insights into mycobacterium evolution. PLoS ONE. 2(10):e968
Gandhe, A S., John, S H and Nagaraju, J. Noduler, A novel immune upregulated protein mediates nodulation response in insects. Journal of Immunology 2007 (In press)
Biju, S D., Bocxlaer, I V., Giri, V B., Roelants, K., Nagaraju, J and Bossuyt, F. (2007) A new nightfrog, Nyctibatrachus minimus sp. nov. (Anura: Nyctibatrachidae): The smallest frog from India. Current Science. 93: 854-858
Reddy, V L N., Archak, S and Nagaraju, J. (2007) Capillary Electrophoresis is essential for microsatellite marker based detection and quantification of adulteration of basmati rice (Oryza sativa). Journal of Agricultural and Food Chemistry. 55: 8112-8117.
Kanginakudru, S., Royer, C., Edupalli S V., Jalabert, A., Mauchamp, B., Chandrashekaraiah, Prasad, S V., Chavancy, G., Couble, P and Nagaraju, J. (2007) Targeting ie-1 gene by RNAi induces baculoviral resistance in lepidopteran cell lines and in the transgenic silkworms. Insect Molecular Biology. 16: 635-44
Archak S and Nagaruju J (2007) Computational prediction of rice (Oryza sativa) miRNA targets. Genomics Proteomics and Bioinformatics (In press)
Ravi Kumar A, Satish V, Balakrish Nair G, Nagaraju J (2007) Genetic charecterization of Virbio chlerae strains by inter simple sequence repeat-PCR. FEMS microbiology letters 272: 251 - 258
Bashyam MD and Hasnain SE (2007) Array-based comparitive Genomic Hybridization: applications in cancer and tuberculosis. Bioarrays, Ed. K Appasani, Humana press.
Sen R, Chalissery J and Muteeb G (2007). Nus factors of Escherichia coli. Invited chapter of the book Escherichia coli and Salmonella: Cellular and Molecular Biology. ASM press.
Sander Granneman, ChieYu Lin, Erica A. Champion, Madhusudan R. Nandineni, Cornelia Zorca and Susan J. Baserga. The nucleolar protein Esf2 interacts directly with the DExD/H box RNA helicase, Dbp8, to stimulate ATP hydrolysis. Nucleic Acids Research (2006), 34: 3189-3199.
Manna S. K., Manna P., and Sarkar A. (2006): Inhibition of RelA phosp horylation sensitizes chemotherapeutic agents-mediated apoptosis in constitutive NF-kappaB-expressing and chemoresistant cells. Cell Death & Differentiation 2006 Apr 28; [Epub ahead of print] PMID: 16645640 [PubMed - as supplied by publisher]
Manna S. K., Rangasamy T., Wise K., Sarkar S., Shishodia S., Biswal S., and Ramesh G. T. (2006): Environmental Tobacco Smoke Activates Nuclear Transcription Factor kappa B, Activator Protein-1, and Stress Responsive Kinases in Mouse Brain. Biochemical Pharmacology 71(11):1602-1609.
Sarkar S., Wise K. C., Manna S. K., Ramesh V., Yamauchi K., Thomas R. L., Wilson B. L., Kulkarni A. D., Pellis N. R., and Ramesh G. T. (2006): Activation of activator protein-1 in mouse brain regions exposed to stimulated microgravity. In Vitro Cellular & Developmental Biology â€“ Animal 42(3): 96-99. <>
Manna S. K., Sarkar, A., and Sreenivasan, Y. (2006): alpha-Melanocyte Stimulating Hormone downregulates CXC receptors through activation of neutrophil elastase. European Journal of Immunolog36(3): 754-769.
Archana S Gandhe, Arunkumar KP, Serene H John, Nagaraju J (2006) Analysis of bacteria-challenged wild silkmoth, Antheraea mylitta (Lepidoptera) transcriptome reveals potential immune genes. BMC Genomics 7:184
Gutierrez MC, Ahmed N (joint first authors), Willery E, Narayanan S, Hasnain SE, Chauhan DS, Katoch VM, Vincent V, Locht C and Supply P (2006) Predominance of ancestral lineages of Mycobacterium tuberculosis in India suggests an ancient focus of tuberculosis in South Asia. Emerging Infectious Dis (Accepted).
MD Bashyam, A RadhaRama Devi, M Gopikrishna, R Ratheesh, G Savithri and G Swarnalata. (2006). Farber lipogranulomatosis-clinical and molecular genetic analysis reveals a novel mutation In an Indian family. J Hum Genet. (In press).
Banerjee S, Chalissery J, Bandey I and Sen R(2006) Rho-dependent transcription termination. More questions than answers. Journal of Microbiology 44:11-22.
Du X, Subba Rao, MRK, Xue Qin Chen, Wei Wu, Mahalingam S and Balasundaram D (2006) The homologous putative GTPases Grn1p from fission yeast and the human GNL3L are required for growth and play a role in processing of nucleolar pre-rRNA. Molecular Biology of the Cell 17; 460-474.
Kazim SN, Sarin SK, Sharma BC, Khan LA, Hasnain SE (2006) Characterization of naturally occurring and Lamivudine-induced surface gene mutants of hepatitis B virus in patients with chronic hepatitis B in India. Intervirology 49:152-160.
Khan N, Rahim SS, Boddupalli CS, Ghousunnissa S, Padma S, Pathak N, Thiagarajan D, Hasnain SE, Mukhopadhyay S (2006) Hydrogen peroxide inhibits IL-12 p40 induction in macrophages by inhibiting c-rel translocation to the nucleus through activation of calmodulin protein. Blood 107:1513-1520.
Kenchappa P, Duggirala A, Ahmed N, Pathengay A, Das T and Hasnain SE (2006) Fluorescent amplified fragment length polymorphism (FAFLP) genotyping demonstrates the role of biofilm-producing methicillin-resistant periocular Staphylococcus epidermidis strains in postoperative endophthalmitis. BMC Ophthalmology 6: 1.
Manna SK, Sarkar A and Sreenivasan Y (2006) Î±-Melanocyte Stimulating Hormone downregulates CXC receptors through activation of neutrophil elastase. European Journal of Immunology 36: 754-769.
Manna SK, Sreenivasan Y and Sarkar A (2006) Cardiac glycoside inhibits IL-8-induced biological responses by downregulating IL-8 receptors through altering membrane fluidity. Journal of Cell Physiology 207:195-207.
Manna SK, Rangasamy T, Wise K, Sarkar S, Shishodia S, Biswal S and Ramesh GT (2006) Environmental tobacco smoke activates nuclear transcription factor kappa B, activator protein-1, and stress responsive kinases in mouse brain. Biochemical Pharmacology 71: 1602-1609.
Radha Rama Devi A, Naushad S M and Krishna Prasad C (2006) Evaluation of total plasma homocysteine in Indian newborns using heel-prick samples. Indian Journal of Pediatrics 73: 21-26.
Ramasarma T and Rao AV (2006) Decavanadate interacts with microsomal NADH oxidation system and enhances cytochrome C reduction. Molecular and Cellular Biochemistry 281: 139-144.
Rao KR, Ahmed N, Sriramula S, Sechi LA and Hasnain SE (2006) Rapid identification of Mycobacterium tuberculosis Beijing genotypes on the basis of the mycobacterial interspersed repetitive unit locus 26 signature. Journal of Clinical Microbiology 44:274-277.
Rao KR, Kauser F, Sriramula S, Sechi LA, Ahmed N and Hasnain SE (2006) Analysis of genomic downsizing on the basis of region-of-difference polymorphism profiling of Mycobacterium tuberculosis patient isolates reveals geographic partitioning. Journal of Clinical Microbiology 43:5978-5982.
Sechi LA, Ahmed N, Felis GE, Dupre I, Cannas S, Fadda G, Bua A and Zanetti S (2006) Immunogenicity and cytoadherence of recombinant heparin binding haemagglutinin (HBHA) of Mycobacterium avium subsp. paratuberculosis: Functional promiscuity or a role in virulence? Vaccine 24:236-243.
Sechi LA, Mara L, Cappai P, Frothingam R, Ortu S, Leoni A, Ahmed N and Zanetti S (2006) Immunization with DNA vaccines encoding different mycobacterial antigens elicits a Th1 type immune response in lambs and protects against Mycobacterium avium subspecies paratuberculosis infection. Vaccine 24:229-235.
Singhal PK, Rajendra Kumar P, Subba Rao MRK, Mahesh Kyasani and Mahalingam S. (2006) Simian Immunodeficiency Virus Vpx is imported into the nucleus via importin alpha dependent and independent pathways. Journal of Virology 80: 526-536.
Sreenu VB, Kumar P, Nagaraju J and Nagarajaram H A (2006) Microsatellite polymorphism across the M. tuberculosis and M. bovis genomes: Implications on genome evolution and plasticity. BMC Genomics 7:78.
Tundup S, Akhter Y, Thiagarajan D and Hasnain SE (2006) Clusters of PE and PPE genes of Mycobacterium tuberculosis are organized in operons: evidence that PE Rv2431c is co-transcribed with PPE Rv2430c and their gene products interact with each other. FEBS Letters 580:1285-1293.
Varsha (2006) DNA fingerprinting in criminal justice system: An overview. DNA and Cell Biology 25: 181-188.
Vijaykrishnan S, Qamra R, Verma C, Sen R and Mande SC (2006) Cation-mediated interplay of loops in Mycobacterium tuberculosis Chaperonin-10. Journal of Biomolecular and Structural Dynamics 23: 365-37.
Arunkumar KP, Metta M and Nagaraju J (2006) Molecular phylogeny of silkmoths reveals the origin of domesticated silkmoth, Bombyx mori from Chinese B. mandarina and paternal inheritance of Antheraea proylei mitochondrial DNA. Molecular Phylogenetics and Evolution.
Khurad AM, Kanginakudru S, Qureshi SO, Rathod MK, Rai MM and Nagaraju J (2006) A new Bombyx mori larval ovarian cell line highly susceptible to nucleopolyhedrovirus. Journal of Invertebrate Pathology.
Johny S, Kanginakudru S, Muralirangan MC and Nagaraju J (2006) Morphological and molecular characterization of a new microsporidian (Protozoa: Microsporidia) isolated from Spodoptera litura (Fabricius) (Lepidoptera: Noctuidae). Parasitology.
Manna SK, Manna P and Sarkar A (2006) Inhibition of RelA phosphorylation sensitizes chemotherapeutic agents-mediated apoptosis in constitutive NF-kappaB-expressing and chemoresistant cells. Cell Death & Differentiation
Negi DS, Alam M, Bhavani SA and Nagaraju J (2006) Multi-step microsatellite mutation in the maternally transmitted locus D13S317: A case of maternal allele mismatch in the child. International Journal of Legal Medicine.
Pani, B., Banerjee, S., Chalissery,J., Abhishek, M., Ramya, M. L., Suganthan, R. and Sen, R. (2006). Mechanism of inhibition of Rho-dependent transcription termination by bacteriophage P4 protein Psu. Journal of Biological Chemistry.
Qamra R, Prakash P, Aruna B, H asnain SE and Mande SC (2006) A crystal structure of Mycobacterium tuberculosis chorismate mutase reveals an unexpected gene duplication, and suggest a role in host-pathogen interactions. Biochemistry
Ranjan S, Seshadri J, Vindal V. Yellaboina S and Ranjan A (2006) iCR: a web tool to identify conserved targets of a regulatory protein across the multiple related prokaryotic species. Nucleic Acids Research
Ranjan S, Yellaboina S and Ranjan A (2006) IdeR: From target recognition to physiological functions. Critical Reveiws in Microbiology
Sarkar S, Wise KC, Manna SK, Ramesh V, Yamauchi K, Thomas RL, Wilson BL, Kulkarni AD, Pellis NR and Ramesh GT (2006) Activation of activator protein-1 in mouse brain regions exposed to stimulated microgravity. In Vitro Cell Developmental Biology â€“ Animal
Yellaboina S, Ranjan S, Vindal V and Ranjan A (2006) Comparative analysis of iron regulated genes in mycobacteria. FEBS Letters
Bashyam MD and Hasnain SE (2006) Array-based comparitive genomic hybridization: applications in cancer and tuberculosis. Bioarrays, Ed. K Appasani, Humana press.
Devi SM, Ahmed I, Khan AA, Rahman SA, Alvi A, Sechi LA and Ahmed N (2006). Genomes of Helicobacter pylori from native Peruvians suggest admixture of ancestral and modern lineages and reveal a western type cag-pathogenicity island. BMC Genomics 7(1):191.
M.S. Achary, A. B.M. Reddy, S. Chakrabarti , S.G. Panicker, A.K. Mandal, N.Ahmed, D. Balasubramanian, S.E. Hasnain, and Nagarajaram HA (2006) Disease Causing Mutations in Proteins: Structural Analysis of the CYP1b1 Mutations Causing Primary Congenital Glaucoma in Humans. Biophysical Journal. (In Press).
Madhusudan R. Nandineni. Annual Review of Genomics and Human Genetics (2005). Current Science (2006), 91: 1413-1415.
Kaur, R., Domergue, R., Zupancic, M. and Cormack, B.P. (2005) A yeast by any other name: Candida glabrata and its interaction with the host. Current Opinion in Microbiology 8: 378-384
Sander Granneman, Madhusudan R. Nandineni and Susan J. Baserga. The putative ATPase Fap7 mediates cytoplasmic 20S pre-rRNA processing through a direct interaction with Rps14. Molecular and Cellular Biology (2005), 25: 10352-10364.
Subhadeep Chatterjee* and Ramesh V. Sonti. 2005. Virulence deficiency caused by a transposon insertion in the purH gene of Xanthomonas oryzae pv. oryzae. Canadian Journal of Microbiol. Vol. 51, 575-581.
* (Corrosponding author).
H.A.Nagarajaram ,Prathima Iengar and Indira Ghosh (2005) In silico approach to antimalarial drug discovery: Design of selective inhibitor to Plasmodium falciparum aspartic proteases Frontiers in Biophysics 168-181.
Ahmed N (2005) 23 years of the discovery of Helicobacter pylori: Is the debate over? Annals Clinical Microbiology and Antimicrobials 4:17. (Editorial)
Ali SM, Khan AA, Tiwari SK, Ahmed N, Rao LV and Habibullah CM (2005) Association between Cag-pathogenicity island in Helicobacter pylori isolates from peptic ulcer, gastric carcinoma and non-ulcer dyspepsia subjects with histological changes. World Journal of Gastroenterolgy 11: 6815-6822
Ali SM, Khan AA, Ahmed I, Musaddiq M, Ahmed KS, Polasa H, Rao LV, Habibullah CM, Sechi LA and Ahmed N (2005) Antimicrobial activities of eugenol and cinnamaldehyde against the human gastric pathogen Helicobacter pylori. Annals of Clinical Microbiology and Antimicrobials 4: 20
Akif M, Suhre K, Verma C and Mande SC (2005) Conformational flexibility of M. tuberculosis thioredoxin reductase: crystal structure and normal mode analysis. Acta Crystallogaphica D61:1603 -1611
Banerjee S, Nandyala A, Podili R, Katoch VM and Hasnain SE (2005) Comparison of Mycobacterium tuberculosis isocitrate dehydrogenases (ICD-1 and ICD-2) reveals differences in coenzyme affinity, oligomeric state, pH tolerance and phylogenetic affiliation. BMC Biochemistry 6: 20
Cheeran A, Suganthan R, Swapna G, Bandey I, Acharya S, Nagarajaram HA and Sen R (2005) E.coli RNA polymerase mutations impaired for H 19B N specific transcription antitermination are located close to the upstream edge of 7RNA:DNA hybrid and beginning of RNA exit channel of elongation complex. Journal of Molecular Biology 352: 28-43
Deshpande A, Nimsadkar S and Mande SC (2005) Effect of alcohols on protein hydration: Crystallographic analysis of hen egg white lysozyme in presence of alcohols. Acta Crystallogaphica D61:1005-1008
Habibullah CM, Habeeb MA and Ahmed N. (2005) Helicobacter pylori: Eradicate or not? Indian Journal of Medical Research (Editorial) 122:93-95
Kauser F, Hussain MA, Ahmed I, Srinivas S, Devi M, Majeed AA, Rao KR, Khan AA, Sechi LA and Ahmed N (2005) Comparing genomes of Helicobacter pylori isolates recovered from ulcer disease patients in England. BMC Microbiology 5:32
Kenchappa P, Sangwan VS, Ahmed N, Rao KR, Pathengay A, Mathai A, Mansoori T, Das T, Hasnain SE and Sharma S (2005) High-resolution genotyping of Pseudomonas aeruginosa strains linked to acute post cataract surgery endophthalmitis outbreaks in India. BMC Annals of Clinical Microbiology and Antimicrobials. 4; 19
Manna SK, Sarkar S, Barr J, Wise K, Barrera EV, Jejelowo O, Rice-Ficht AC and Ramesh GT (2005) Single walled carbon nanotube induces oxidative stress and activates nuclear transcription factor-kB in human keratinocytes. Nano Letters 5: 1676-84
Manna SK, Felix K, Wise K, Barr J and Ramesh GT (2005) Low levels of arsenite activates nuclear factor-kappa B and activator protein-1 in immortalized mesencephalic cells. Journal of Biochemical and Molecular Toxicology 19: 67-77
Marec F, Neven L G, Robinson A S, Vreysen M,. Goldsmith M R, Nagaraju J and Franz G (2005) Development of genetic sexing strains in Lepidoptera: From traditional to transgenic approaches. Journal of Economic Entomology 98: 248-259
Miao XX, Xu SJ, Li MH, Li MW, Huang JH, Dai FY, Marino SW, Mills DR, Zeng P, Mita K, Jia SH, Zhang Y, Liu WB, Xiang H, Guo QH, Xu AY, Kong XY, Lin HX, Shi15YZ, Lu G, Zhang X, Huang W, Yasukochi Y, Sugasaki T, Shimada T,
Nagaraju J, Xiang ZH, Wang SY, Goldsmith MR, Lu C, Zhao GP and Huang YP (2005) Simple sequence repeat-based consensus linkage map of Bombyx mori. Proceedings of the National Academy of Sciences USA 102:16303-16308
Nagaraja GM, Mahesh G, Satish V, Madhu M, Muthulakshmi M and Nagaraju J (2005) Genetic mapping of Z-chromosome and identification of W-chromosome specific markers in the silkworm, Bombyx mori. Heredity 95:148-157
Padma S, Sowjanya AP, Poli UR, Jain M, Rao BN and Ramakrishna G (2005) Downregulation of calcineurin activity in cervical carcinoma. Cancer Cell International 5:7
Prakash P, Pathak N and Hasnain SE (2005) PheA (Rv3838c) of Mycobacterium tuberculosis encodes an allosterically regulated monofunctional prephenate dehydratase that requires both catalytic and regulatory domains for optimum activity. Journal of Biological Chemistry 280:20666-20671
Prakash P, Yellaboina S, Ranjan A and Hasnain SE (2005) Computational prediction and experimental verification of novel IdeR binding sites in the upstream sequences of Mycobacterium tuberculosis ORFs. Bioinformatics 21: 2161-2166
Prakash P, Aruna B, Sardesai AA and Hasnain SE (2005) Purified recombinant hypothetical protein coded by open reading frame Rv1885c of Mycobacterium tuberculosis exhibits a monofunctional AroQ class of periplasmic chorismate mutase activity. Journal of Biological Chemistry 280:19641-19648
Prouzet-Mauleon V, Hussain MA, Lamouliatte H, Kauser F, Megraud F and Ahmed N (2005) Pathogen evolution in vivo: genome dynamics of two isolates obtained nine years apart from a duodenal ulcer patient infected with a single Helicobacter pylori strain. Journal of Clinical Microbiology 43:4237-4241
Qamra R, Mande SC, Coates, ARM and Henderson B (2005) The unusual chaperonins of Mycobacterium tuberculosis. Tuberculosis 85, 385-394
Qamra R, Prakash P, Aruna B, Hasnain SE and Mande SC (2005) Crystallization and preliminary X-ray crystallographic studies of Mycobacterium tuberculosis chorismate mutase. Acta Crystallographica F61:473-475
Sah NK, Singh SN, Sahdev S, Banerji S, Jha V, Khan Z and Hasnain SE (2005) Indian herb 'Sanjeevani' (Selaginella bryopteris) can promote growth and protect against heat shock and apoptotic activities of ultra-violet and oxidative stress. Journal of Biosciences 30: 499-505
Sechi LA, Gazouli M, Ikonomopoulos J, Lukas JC, Scanu AM, Ahmed N, Fadda G and Zanetti S (2005) Mycobacterium avium subsp. paratuberculosis, genetic susceptibility to Crohn?s disease and the Sardinians: Way ahead. Journal of Clinical Microbiology 43:5275-5277
N. Silswal, A. K. Singh, B. Aruna, S. Mukhupadhyay, S. Ghosh, and Z. Ehtesham (2005). Human resistin stimulates the pro-inammatory cytokines TNF-. and IL-12 in macrophages by NF-.B-dependent pathway. Biochemical and Biophysical Research Communications 334:1092-1101
Singh A, Sowjanya P and Ramakrishna G (2005) The Wild type Ras: Road ahead. FASEB Journal 19 : 161-169.
Sowjanya AP, Jain M, Poli UR, Padma S, Das M, Shah KV, Rao BN, Devi AR, Gravitt PE and Ramakrishna G (2005) Prevalence and distribution of high-risk Human papilloma virus (HPV) types in invasive squamous cell carcinoma of the cervix and in normal women in Andhra Pradesh, India. BMC Infectious Diseases 5(1):116
Vijay Kumar S, Ranjan S, Saxena V, Rajesh V, Roy SK, Kochar D, Ranjan A and Das A (2005) Plasmodium falciparum: genetic diversity of C-terminal region of MSP-1 in isolates from Indian sub-continent. Experimental Parasitolgy 110: 384-388
Varadarajan P, Mahalingam S, Gandotra S, Dorairajoo DS, Dâ€™souza VM and Balasundaram D (2005) The functionally conserved nucleoporins Nup124p from fission yeast and the human Nup153 mediate nuclear import and activity of the Tf1 retrotransposon and HIV-1 Vpr. Molecular Biology of the Cell 16: 1823-1838
Varsha (2005) DNA fingerprinting : An overview. Proceedings of A.P. Akademi of Sciences 9: 317-323
Wise KC, Manna SK, Yamauchi K, Ramesh V, Wilson BL, Thomas RL, Sarkar S, Kulkarni AD, Pellis NR and Ramesh GT (2005) Activation of nuclear transcription factor kappa B in mouse brain induced by a stimulated microgravity. In Vitro Cell Developmental Biology â€“ Animal 41: 118-123
Ahmed K S, Khan AA, Tiwari SK, Ali SM, Ahmed I, Kauser F, Hussain MA, Abid Z, Habeeb A, Ahmed N and Habibullah CM (2005). Prevalence study of Helicobacter pylori at Oral and Gastroduodenal Sites of South Indian Population to Elucidate Transmission pathways. Singapore Med. J (I n press).
Ahmed N and Sechi LA (2005) Helicobacter pylori and gastroduodenal pathology: New threats of the old friend. Annals Clin. Microbiol. Antimicrobials (In press).
Alvi A, Khan AA, Tiwari SK, Abid Z, Ahmed KS, Habeeb A, Ishaq M, Ahmed N and Habibullah C M (2005). Frequency of Intestinal Metaplasia and Dysplasia among subjects infected with cagE, cagT and vacA positive Helicobacter pylori. World J Gastroenterol (In press).
Arvind Singh, Pavani Sowjanya and Ramakrishna G. (2005). The Wild type Ras: Road ahead. FASEB J. 19(2): 161-169.
Bashyam, M.D, Ryan Bair, Young H Kim, Pei Wang, Tina Hernandez-Boussard, Trobert Tibshirani, Anirban Maitra, Jonathan R. Pollack. Array-based comparaative genomic hybridization identifies localized DNA ampilfications and homozygous deletions in pancreatic cancer. Neoplasia, 7:556-56 2.
F. Marec, L. G. Neven, A. S. Robinson, M. Vreysen, M. R. Goldsmith, J. Nagaraju, G. Franz (2005) Development of genetic sexing strains in Lepidoptera: From traditional to transgenic approaches. Journal of Economic Entomology 98(2): 248-259
Felix, K., Manna, S.K., Wise, K., Barr, J., and Ramesh, G.T. (2005) Low Levels of Arsenite Activates Nuclear Factor kappa B and Activator Protein-1 in Immortalized Mesencephalic Cells. Journal of Biochemical and Molecular Toxicology 19(2), 67-77.
Kauser F, Hussain M A, Ahmed I, Ahmad N, Habeeb A, Khan A A and Ahmed N (2005) Comparing genomes of Helicobacter pylori strains from the high altitude desert of Ladakh, India J. Clin. Microbiol. (In press).
M. Dharma Prasad, M. Muthulakshmi, M. Madhu, Sunil Archak, K. Mita and J. Nagaraju (2005) Survey and analysis of microsatellites in the silkworm, Bombyx mori: Frequency, Distribution, Mutations, Marker potential and their Conservation in heterologous species Genetics 169:197-214.
Manna, P., Narang, K. K., and Manna, S. K. (2005) 1,2,4-thiadiazolidine derivative inhibits Nuclear Transcription Factor-kappaB and its dependent genes activation but induces apoptosis. International Journal of Cancer 113, 549-560.
Nagaraja GM, Mahesh G, Satish V, Madhu M, Muthulakshmi M and Nagaraju J (2005) Genetic mapping of Z-chromosome and identification of W-chromosome specific markers in the silkworm, Bombyx mori. Heredity (In press).
Padma S, Sowjanya AP, Poli UR, Jain M, Rao B, Ramakrishna G. (2005) Downregulation of calcineurin activity in cervical carcinoma. Cancer Cell Int. Apr 1;5(1):7.
Prakash P., Yellaboina S., Ranjan A. and Hasnain S.E.(2005) Computational prediction and experimental verification of novel IdeR binding sites in the upstream sequences of Mycobacterium tuberculosis ORFs Bioinformatics 00,000-000 (In press).
Prasad,M.D., Muthulakshmi,M., Arunkumar,K.P., Madhu,M., Sreenu,V.B., Pavithra,V., Bose,B., Nagarajaram, H.A., Mita,K., Shimada, T. and Nagaraju, J. (2005) SilkSatDb: A microsatellite database of the silkworm, Bombyx mori. Nucleic Acids Research. 33: D403-D406.
R.K.Gundu, B.Bose, S.Swamynathan, V.B.Sreenu, N.Pavan, S.Acharya and Nagarajaram HA Frontiers in Bioinformatics Research: The Biodiversity Issues (2005) In: "Biodiversity : Status and Prospects" Editors: Pramod Tandon, Manju Sharma and Renu Swarup, Narosa Publishing House, New Delhi.*
Tiwari SK, Khan AA, Ahmed KS, Ahmed I, Kauser F, Hussain MA, Ali SM, Alvi A, Abid Z, Habeeb A, Ahmed N and Habibullah CM. (2005) Rapid diagnosis of Helicobacter pylori infection in dyspeptic patients using salivary secretion: A non-invasive approach. Singapore Med. J (In press).
Tiwari SK, Khan AA, Khan SA, Ali SM, Habeeb A, Kauser F, Hussain MA, Ahmed N and Habibullah CM. (2005). PCR based analysis of the cag-PAI of Helicobacter pylori from saliva: An approach for rapid molecular genotyping in correlation with disease status. J. Gasteroenterol. Hepatol. (In press).
Wise, K.C., Manna, S.K., Yamauchi, K., Ramesh, V., Wilson, B.L., Thomas, R.L., Sarkar, S., Kulkarni, A.D., Pellis, N.R., Ramesh, G.T. (2005) Activation of nuclear transcription factor kappa B in mouse brain induced by a stimulated microgravity. In Vitro Cellular & Developmental Biology - Animal (In press).
Vucenik I, Ramakrishna G, Tantivejkul K, Anderson LM, Ramljak D. (2005) Inositol hexaphosphate (IP6) blocks proliferation of human breast cancer cells through a PKCdelta-dependent increase in p27Kip1 and decrease in retinoblastoma protein (pRb) phosphorylation. Breast Cancer Res Treat. May;91(1):35-45.
Kaur, R., Castano, I. and Cormack, B.P. (2004) Functional genomic analysis of fluconazole susceptibility in the pathogenic yeast Candida glabrata: Roles of calcium signaling and mitochondria. Antimicrobial Agents and Chemotherapy 48: 1600-1613.
Madhusudan R. Nandineni R.S. Laishram and Gowrishankar, J. Osmosensitivity associated with insertions in argP (iciA) or glnE in glutamate synthase (GOGAT)-deficient mutants of Escherichia coli. Journal of Bacteriology (2004), 186: 6391-6399.
Madhusudan R. Nandineni and Gowrishankar, J. Evidence for an arginine exporter encoded by yggA (argO) that is regulated by the LysR-type transcriptional regulator ArgP in Escherichia coli. Journal of Bacteriology (2004), 186:3539-3546.
A. M. Khurad, A. Mahulikar, M. K. Rathod, M. M. Rai, S. Kanginakudru, and J. Nagaraju. (2004). Vertical Transmission of Nucleopolyhedrovirus in the Silkworm, Bombyx mori L. Journal of Invertebrate Pathology 87: 8-15.
A. Radha Rama Devi and S.M. Naushad. "Newborn screening in India". The Indian Journal of Pediatrics 71(2). 157-160.
A.Radha Rama Devi, V. Govindiah, G. Ramakrishna and S.M. Naushad. "Prevalence of Methylene tetrahydrofolate reductase polymorphism in South Indian population." Current Science 86(3) 44 0-443.
Abid Hussain M, Kauser F, Khan A A, Tiwari S, Habibullah CM and Ahmed N (2004). Molecular genotyping of Helicobacter pylori isolates from different human populations using genomic fingerprinting of ERIC regions: Implications in strain identification and geographic evolution. J. Clin. Microbiol. 42:2372-2378 (June 2004).
Ahmed N and Hasnain S E (2004) Genomics of Mycobacterium tuberculosis:Old threats and new trends. Indian J Med Res (In press).
Ahmed Kamal, G. Ramesh, O. Srinivas, P. Ramulu, N. Laxman ,Tasneem Rehana, M.Deepak, M.S. Achary and Nagarajaram HA (2004). Design, Synthesis, and Evaluation of Mixed Imine-Amine Pyrrolobenzodiazepine Dimers with Efficient DNA-Binding Affinity and Potent Cytotoxicity. Bio-organic & Medicinal Chemistry 12:5427-5436.
Ahmed N, Alam M, Rajender Rao K, Kauser F, Ashok Kumar N, Qazi N N, Sangal V, Sharma VD, Das R, Katoch VM, Murthy KJR, Suneetha S, Sharma S K, Sechi LA, Gilman RH and Hasnain SE (2004). Molecular genotyping of a large, multi-centric collection of tubercle bacilli indicates geographical partitioning of strain variation: Implications in global epidemiology of M. tuberculosis. J. Clin. Microbiol. (In press).
Awasthi AK, Nagaraja G, Naik G, Kanginakudru S, Thangavelu K, Nagaraju J. (2004) Genetic diversity and relationships in mulberry (genus Morus) as revealed by RAPD and ISSR marker assays. BMC Genet. Jan 10; 5(1): 1 online version.
NBSdb: New Born Screening Database (2004) Buddhaditta Bose, Gyan Rajkumar, M. Narendar Pavan, A RadhaRama Devi, Nagarajaram, HA Indian Journal of Medical Informatics online.
Carroll I M, Ahmed N, Beesley S M, Khan A A, Ghousunnissa S, O MorÃ¡in C A and Smyth C J (2004) Microevolution between paired antral and paired antral and corpus Helicobacter pylori isolates recovered from individual patients. J Med Microbiol (In press).
Carroll I M, Khan AA and Ahmed N (2004). Revisiting the pestilence of Helicobacter pylori: insights into geographical genomics and pathogen evolution. Infection Genet Evol. (In press).
Felix, K., Wise, K., Manna, S., Yamauchi, K., Wilson, B. L., T homas, R., Kulkarni, A., Pellis, N. R., and Ramesh, G. T. (2004): Altered Cytoki ne Expression in Tissues of Mice Subjected to Simulated Microgravity. Mole cular and Cellular Biochemistry 266, 79-85.
Hasnain SE and Ahmed N (2004). Leptospirosis: An epidemiologic, genomic and evolutionary perspective. Lancet Infectious Diseases 00:0000-0000 (In press).
King, R.A., Markov, D., Sen, R., Severinov, K. and Weisberg, R. A. (2004) A conserved Zinc binding site in the largest subunit of DNA-dependent RNA polymerase modulates intrinsic transcription termination and antitermination but does not stabilize the elongation complex. J. Mol. Biol., 342(4): 1143-54.
Kauser F, Khan AA, Hussain MA, Carroll IM, Ahmad N, Tiwari S, Shouche Y, Das B, Jyohtirmayee CS, Alam M, Ali SM, Habibullah CM, Sierra R, Megraud F, Sechi LA and Ahmed N (2004). The cag pathogenicity island (cag-PAI) of Helicobacter pylori is disrupted in majority of patient isolates from different human populations. J. Clin. Microbiol. 42: 0000-0000 (September 2004) (In press).
R. Qamra and S. C. Mande. (2004) Crystal structure of the 65kDa heat shock protein, Chaperonin 60.2 of Mycobacterium tuberculosis. J. Bacteriol.(2004) v. 186, 8105-8113.
R. Qamra, V. Srinivas and S. C. Mande (2004) Mycobacterium tuberculosis GroEL homologues unusually exist as lower oligomers and retain the ability to suppress aggregation of substrate proteins. J. Mol. Biol. (2004) v.342, 605-617.
S. S. Rahim, N. Khan, C. S. Boddupalli, S. E. Hasnain and S. Mukhopadhyay* (2004). IL-10 mediated suppression of IL-12 production in RAW 264.7 cells also involves c-rel transcription factor. Immunology 114:313-321 (*Corresponding Author)
S. Mukhopadhyay*, V. M. L. Srivastava, P. K. Murthy and S. E. Hasnain (2004). Poorer NF-.B signaling by microfilariae in macrophages from BALB/c mice affects their ability to produce cytotoxic levels of nitric oxide to kill microfilariae. FEBS Letters 567:275-280 (*Corresponding Author)
S. Ghosh, S. Rasheedi, S. S. Rahim, S. Banerjee, R. K. Choudhary, P. Chakhaiyar, N. Z. Ehtesham, S. Mukhopadhyay and S. E. Hasnain (2004). Method for enhancing solubility of the expressed recombinant proteins in Escherichia coli. Biotechniques 37:418-423
M D Bashyam and S E Hasnain. (2004) The extracytoplasmic function sigma factors: role in bacterial pathogenesis. Infection, Genetics and Evolution 49:408-413.
Majeed, A.A., Ahmed, N., Rao, K.R., Ghousunnissa, S., Kausar, F., Bose, B., Nagarajaram, H.A., Katoch, V.M., Cousins, D.V., Sechi, L.A., Gilman, R.H. and Hasnain, S.E. (2004) AmpliBASE MTTM: A Mycobacterium tuberculosis diversity knowledgebase. Bioinformatics Published online ahead of print edition (In press).
Manna, P, Singh, R., Narang, K. K., and Manna, S. K. (2004): Synthesis, anti-fungal, antitumor and anti-inflammatory activities of some new 5-substitutedarylimino-2-N-p-tolylsulphonyl-3-oxo-1,2,4-thiadiazolidines. Indian Journal of Heterocyclic Chemistry 13: 249-252.
Metta M, Kanginakudru S, Gudiseva N, Nagaraju J. (2004) Genetic characterization of the Indian cattle breeds, Ongole and Deoni (Bos indicus), using microsatellite markers - a preliminary study. BMC Genet. 5:16. online version
Murali Dharan Bashyam, Leena Bashyam, Gorinabele R Savithri, Munimanda Gopikrishna, Vartul Sangal, Akela Radha Rama Devi. (2004) Molecular genetic analyses of b-thalassemia in South India reveals rare mutations in the b-globin gene. Journal of Human Genetics, 49:408-413.
Nagaraja, J. Nagaraju and H. A. Ranganath (2004) Molecular phylogeny of the nasuta subgroup of Drosophila based on 12S rRNA, 16S rRNA and CoI mitochondrial genes, RAPD and ISSR polymorphisms Genes and Genetic systems 79: 293-299.
Nagaraju. J (2004) Spider silks: A possible key to evolution of spiders Heredity 93: 520-521.
Prabhakara K, Angelena M, Ramadevi AR (2004) Familial (9;11)(p22;p15.3)pat translocation and XX sex reversal in a phenotypic boy with cryptorchidism and delayed development. Genetic Counseling 51(4), 355-357.
Prabhakara K, Ramadevi AR (2004) Premature centromere division versus C-anaphases in cultures: Need for consensus and guidelines. American Journal of Medical Genetics 124(3):331.
Prabhakara K, Wyandt HE, Huang XL, Prasad KS, Ramadevi AR (2004) Recurrent proximal 18p monosomy and 18q trisomy in a family with a maternal pericentric inversion of chromosome 18. # Ann Genet 47: 297-303.
S. N. Rao, M. Muthulakshmi, S. Kanginakudru, and J. Nagaraju (2004) Phylogenetic relationships of three new microsporidian isolates from the silkworm, Bombyx mori. Journal of Invertebrate Pathology 86:87-95.
Sarkar, A., Sreenivasan, Y., Ramesh, G. T., and Manna, S. K. (2004) Beta-D-glucoside suppresses TNF-induced activation of nuclear transcription factor kappaB but potentiates apoptosis. Journal of Biological Chemistry 279(32), 33768-33781 May 25 [Epub ahead of print].
Siddiqi N, Das R, Pathak N, Banerjee S, Ahmed N, Katoch V M, and Hasnain SE (2004) Mycobacterium tuberculosis isolate with a distinct genomic identity overexpresses a TAP like efflux pump. Infection 32:109-11.
Sreenu, V.B., Ranjitkumar, G., Swaminathan, S., Priya, S., Bose, B., Narendra Pavan, M., Nagaraju, J., Nagarajaram, H.A. (2004) MICdb - Database of Prokaryotic Microsatellites. Nucleic Acids Research Published in online database issue.
T. Ramasarma and H. N. Ravishankar (2004) Formation of an oxo-radical of peroxovanadate during reduction of diperoxovanadate with vanadyl sulfate or ferrous sulfate Biochemica Biophysica Acta (In press).
Tiwari SK, Khan AA, Khan SA, Ali SM, Habeeb A, Kauser F, Hussain MA, Ahmed N and Habibullah CM. (2004). PCR based analysis of the cag-PAI of Helicobacter pylori from saliva: An approach for rapid molecular genotyping in correlation with disease status. Gasteroenterol. Hepatol. (In press)
Vardhini D, Suneetha S, Joshi DSM, Karuna S, Magee X, Vijayalakshmi DSR, Sridhar V, Karunakar KV, Ahmed N, Archelos JJ, Suneetha LM (2004). Comparative proteomics of the M. leprae binding protein myelin P0: its implication in leprosy and other neurodegenerative diseases. Infection Genet Evol 4: 21-28.
Wise K., Manna S., Barr J., Gunasekar P., and Ramesh G. (2004) Activation of activator protein-1 DNA binding activity due to low level of manganese exposure in pheochromocytoma cells. Toxicology Letters 147(3): 237-244.
Yashodha R, Kathirvel M, Sumathi R, Gurumurthi K, Archak S, Nagaraju J. Genetic analysis of Casuarinas using ISSR and FISSR markers (2004). Genetica 122: 161-172.
Yellaboina S., Ranjan S., Chakhaiyar P., Hasnain SE, and Ranjan A. (2004) Prediction of DtxR regulon: Identification of binding sites and operons controlled by Diphtheria toxin repressor in Corynebacterium diphtheriae. BMC Microbiology 4:38.
Yellaboina S., Seshadri J., Senthil Kumar M. and Ranjan A. (2004) Predictregulon: A webserver for the prediction of the regulatory protein binding sites and operons in prokaryote genomes. Nucleic Acids Research32: W318-320.
Sharma K.G., Kaur, R. and Bachhawat, A.K. (2003) The glutathione-mediated detoxification pathway in yeast: an analysis using the red pigment that accumulated in certain adenine biosynthetic mutants of yeast reveals the involvement of novel genes. Archives of Microbiology 180: 108-117.
Castano, I., Kaur, R., Pan, S., Cregg, R., De Las Penas, A., Guo, N., Biery, M.C, Craig, N.L. and Cormack B.P. (2003) Tn7-based genome-wide random insertional mutagenesis of Candida glabrata. Genome Research 13: 905-915.
Subhadeep Chatterjee Rajan Sakaranarayan and Ramesh V Sonti. 2003. PhyA, a secreted protein of Xanthomonas oryzae pv. oryzae, is required for optimum virulence and growth under phytic acid as a sole phosphate source. Molecular Plant-Microbe Interactions. Vol.16(11), 973-982.
Ahmad, R, Kamra, A. and Hasnain, S.E. (2003) Fibroin silk proteins from the non-mulberry silkworm Philosamia ricini are biochemically and immunochemically distinct from those of the mulberry silkworm Bombyx mori. DNA and Cell Biology 00: 000-000 (In press).
Ahmed N, Alam M, Majeed A A, Rahman S A, Cataldi A, Cousins D and Hasnain, S. E. (2003). Genome sequence based, comparative analysis of the fluorescent amplified fragment length polymorphisms (FAFLP) of tubercle bacilli from seals provides molecular evidence for a new species within the Mycobacterium tuberculosis complex. Infection Genet. Evol. 2: 193-199.
Ahmed N, Caviedes L, Alam M, Rao K R, Sangal V, Sheen P, Gilaman RH and Hasnain SE (2003). Distinctiveness of Mycobacterium tuberculosis genotypes from Human Immunodeficiency Virus Type 1-Seropositive and -Seronegative patients in Lima, Peru. J. Clinical Microbiol. 41: 1712-1716.
Ahmed N, Khan AA, Alvi A, Tiwari S, Jyothirmayee CS, Kauser F, Ali A and Habibullah CM (2003). Genomic analysis of Helicobacter pylori from Andhra Pradesh, South India: Molecular evidence for three major genetic clusters Current Science 85:1579-1586.
Ali, S. and Hasnain, S.E. (2003) Genomics of the Human Y Chromosome: 1- Association with male infertility. Gene 321: 25-37.
Aparna, G., Bhuyan, A.K., Sahdev, S., Hasnain, S.E., Kaufman, R.J. and Ramaiah, K.V.A. (2003) Stress-induced apoptosis in Spodoptera frugiperda (Sf9) cells: Baculovirus p35 mitigates eIF2 phosphorylation. Biochemistry 00: 000-000 (In press).
Bashyam, M. D. (2003). Prokaryotic Genom (Michel Blot ed.). Book Review, Current Science, 84:1366-1367. *
Bashyam, M.D. and Hasnain, S.E. (2003) The Human Genome Sequence: impact on health care. Indian Journal of Medical Research 117:43-65.
Bashyam, M. D. and S. Mukhopadhyay (2003). Status of Tuberculosis in India-2003 (R. Nayak, M. S. Shaila and G. R. Rao eds.) and Trends in Malaria and Vaccine Research: The current Indian Scenario (D. Raghunath and R.Nayak eds.). Book Review, Infection, Genetics and Evolution 3:75-77. *
Bashyam, M. D., Gorinabele R Savithri, Murugapiran S Kumar, Calambur Narasimhan and Pratibha Nallari (2003). Molecular genetics of familial hypertrophic cardiomyopathy (FHC). J. Hum. Genet. 48:55-64.
Carroll I M, Ahmed N, Beesley S M, Khan A A, O Mor?in C A and Smyth C J (2003) Fine Structure Molecular Typing of Irish Helicobacter pylori Isolates and their Genetic Relatedness to Strains from Four Different Continents. J. Clin. Microbiol. 41:5755-5759.
Chari VB, K Khaleel-ur-Rehman, N Ahmed, CM Habibullah and SS Singh (2003) UV-B induced stimulation of phosphatidyl inositol 3 kinase in human foetal hepatocytes. Hepatology Research 000:000-000 (In press).
Choudhary, R.K., Mukhopadhyay, S., Chakhaiyar, P., Sharma, N., Murthy K.J.R., Katoch, V.M. and Hasnain S.E. (2003) PPE antigen Rv2430c of Mycobacterium tuberculosis induces a strong B-cell response. Infection Immunity 71: 6338-6343.
Ghosh, S., Singh, A. K., Aruna, B., S. Mukhopadhyay, and Ehtesham, N. Z. (2003) The genomic organization of mouse resistin reveals major difference from the human resistin. Gene 305: 27=34.
Cousins D V, Bernardelli A, Bastida R, Cataldi A, Quse V, Dow S, Redrobe S, Duignan P, Murray A, Dupont C, Ahmed N, Collins DM, Ray Butler W, Dawson D, Rodriguez D, Louriero J, Romano MI, Alito A and Zumarraga M (2003). Tuberculosis in seals is caused by a novel member of the Mycobcterium tuberculosis complex: Mycobacterium tuberculosis subsp. pinnipedae subsp. nov. International J. Systematic Evolutionary Microbiol. 53: 1305-1314 http://dx.doi.org/10.1099/ijs.0.02401-0.
G Ranjit Kumar, M Narendar Pavan, B. Bose, S Swaminathan, Geetha Thanu, P Prashanthi, B Phani Prasad, V B Sreenu, M Sridhar Achary and Nagarajaram HA (2003) EMBnet India Node (EIN) at the Centre for DNA Fingerprinting and Diagnostics: Serving the Indian sub-continent in Bioinformatics. Bioinformatics India 1 2:67-77 (An Invited Article). **
Nagarajaram HA and S.E.Hasnain (2003) Current Status of Post-Genomics Computational Biology "Computing and Information Sciences : Recent Trends" Editor: J.C.Misra, Narosa Publishing House, New Delhi.*
Hasnain, S.E. (2003) Molecular epidemiology of infectious diseases: a case for increased surveillance. Bulletin of the World Health Organization 81:474 (An Invited editorial).**
Hasnain, S.E., Begum, R., Ramaiah, K.V.A., Sahdev S., Shajil, E.M., Taneja, T.K., Manjari, M., Athar, M., Sah,N.K. and Krishnaveni, M., Journal of Biosciences - Review (2003) Host-Pathogen interactions during Apoptosis. Journal of Biosciences 28: 349-358.
Khaleel-ur-Rehman K Ayesha Q, Ahmed N. and Habibullah C M (2003). Tyrosine aminotransferase and gamma-glutamyl transferase activity in human foetal hepatocyte primary cultures under proliferative conditions. Cell Biochem. Func. Published online ahead of print edition. July (2003) (In press)
King, R.A., Sen, R., and Weisberg, R.A. (2003) Using a Lac Repressor Roadblock to Analyze the E.coli Transcription Elongation Complex. Methods in Enzymology, 370:207-18.
Kumar KS, Govindaiah V, Naushad SE, Devi RR, Jyothy A. (2003) Plasma homocysteine levels correlated to interactions between folate states and methylene tretrahydrofolate reductase gene mutation in women with unexplained pregnancy loss. Journal of Obstetrics and Gynaecology. 23: 55-58.
Mandal AK, Prabhakara K, Raddy ABM, Ramadevi AR, Panicker SG (2003) Congenital glaucoma associated with 22p+ variant in a dysmorphic child. Indian Journal of Ophthalomology 51(4), 355-357.
Mohan, M., Taneja, T.K., Sahdev, S., Begum, R., Athar, M. and Hasnain, S.E. (2003) Antioxidants Prevent UV-Induced Apoptosis by Inhibiting Mitochondrial Cytochrome C Release and Caspase Activation in Spodoptera frugiperda (Sf9) Cells. Cell Biology International 27: 483-490.
Panicker, S.G., Mandal, A.K., Reddy, A.B.M., Gothwal, V. and Hasnain, S.E. (2003) Correlations of genotypes with phenotypes in Indian patients with primary congenital glaucoma. Investigative Ophthalmology and Visual Sciences 44:000-000 (In press).
Prasad MD, Han S-J, Nagaraju J, Lee W-J and Brey PT (2003) Cloning and characterization of an eukaryotic initiation factor-2 alpha kinase from the silkworm, Bombyx mori. Biochemica et Biophysica Acta 1628 56-63.
Prasad MD and J.Nagaraju (2003) A comparative phylogenetic analysis of full-length mariner elements isolated from Indian tasar silkmoth, Antheraea mylitta (Lepidoptera: saturniidae) J. Bioscience 28 443-453.
Priscilla Priyadarshini, Bulusu S. Murthy, J. Nagaraju, L. Singh (2003) A GATA-binding protein expressed predominantly in the pupal ovary of the silkworm, Bombyx mori. Insect Biochemistry and Molecular Biology 33 185-195.
Reddy, A.B.M., Panicker, S.G., Mandal, A.K., Hasnain, S.E. and Balasubramanian, D. (2003) Identification of R368H as a predominant CYPB1 allele causing primary congenital glaucoma in Indian patients.Investigative Ophthalmology and Visual Sciences00: 000-000 (In press).
Rekha T, Khan, A A, Ayesha A, Ahmed N and Habibullah CM (2003). Differentiation of Helicobacter pylori isolates before and after treatment by Fluorescent amplified fragment length polymorphism. Indian J. Medical Microbiol. 21:166-171 .
Sahdev, S., Taneja, T.K., Mohan, M., Sah, N.K.,Khar A.K., Hasnain, S.E. and Athar, M. (2003) Baculovirus p35 inhibits oxidant-induced activation of mitochondrial apoptotic pathway. Biochemical and Biophysical Research Communications 307: 483-490.
Sarkar, A., Sreenivasan, Y., and Manna, S. K. (2003): alpha-Melanocyte Stimulating Hormone induces cell death in mast cells: Involvement of NF-kB. FEBS Letter 549(1-3), 87-93.
Sarkar, A., Sreenivasan, Y., and Manna, S. K. (2003): Alpha-Melanocyte Stimulating Hormone inhibits lipopolysaccharide-induced biological responses by downregulating CD14 from macrophages. FEBS Letter 553(3): 286-94.
Sen, R. and Dasgupta, D. (2003) Simple fluorescence assays to probe the conformational changes of E.coli RNA polymerase during transcription initiation. Methods in Enzymology, 370:598-605.
Shiras A, Bhosale A, Shepal V, Shukla R, Baburao VS, Prabhakara K, Shastry P (2003) A Unique model system for tumor progression in GBM comprising two developed human neuro-epithelial cell lines with differential transforming potential and coexpressing neuronal and glial markers. Neoplasia, 5(6), 520-53.
1. Sreenivasan, Y., Sarkar, A., and Manna, S. K. (2003): Mechanism of Cytosine arab inoside mediated apoptosis: Role of Rel A (p65) dephosphorylation.Oncogene 22(28), 4356-4369.
Sreenivasan, Y., Sarkar, A., and Manna, S. K. (2003): Oleandrin suppresses activation of nuclear transcription factor-kappaB and activator protein-1 and potentiates apoptosis induced by ceramide. Biochem. Pharmacol. 66(11): 2223-39.
Sriramana Kanginakudru, Edupalli Venkata Subbaiah, Pierre Couble and Javaregowda Nagaraju LepidopteraAbstracts. (2003) Towards development of baculoviral resistant strains of the silkworm, Bombyx mori. Sixth International Workshop on the Molecular Biology and Genetics of the Lepidoptera.16pp. Journal of Insect Science, 3:36, Available online: http://insectscience.org/3.36
T. C. Terwilliger, M. S. Park, G. S. Waldo, J. Berendzen, L.-W. Hung, C.-Y. Kim, C. V. Smith, J. C. Sacchettini, M. Bellinzoni, R. Bossi, E. De Rossi, A. Mattevi, A. Milano, G. Riccardi, M. Rizzi, M. M. Roberts, A. R. Coker, P. Tormay, G. Fossati, P. Mascagni, A. R.M. Coates, S. P. Wood, C. W. Goulding, M. Apostol, D. H. Anderson, H. S. Gill, D. S. Eisenberg, B. Taneja, S. Mande, E. Pohl, V,. Lamzin, P. Tucker, M. Wilmanns, C. Colovos, W. Meyer-Klaucke, A. W. Munro, K. J. McLean, K. R. Marshall, D. Leys, J. K. Yang, H.-J. Yoon, B. I. Lee, M. G. Lee, J. E. Kwak, B. W. Han, J. Y. Lee, S.-H. Baek, S. W. Suh, M. M. Komen, V. ML. Arcus, E. N. Baker, J. S. Lott, W. JacobsU Jr.,UT. Alber,U B. Rupp (2003) The TB Structural Genomics Consortium: A Resource for TB Biology Tuberculosis 83, 223- 249.
V.B.Sreenu, G.Ranjitkumar, S.Swaminathan, S.Priya, B.Bose, M.N.Pavan, Geetha Thanu, J.Nagaraju and Nagarajaram HA (2003) MICAS: A fully automated web server for microsatellite extraction and analysis from prokaryote and viral genomic sequences. Applied Bioinformatics 2(3) 165-168.
V.B.Sreenu, Vishwanath Alevoor, J.Nagaraju and Nagarajaram HA (2003) MICdb: Database of Prokaryotic Microsatellites Nucleic Acids Research 31: 106-108
Bashyam, M.D, Viswanathan, P., Venkaiah, B., Kumar, S., Rasheedi, S. and Vrati, S. and Hasnain, S.E. (2003) The homologous region sequence (hr1) of Autographa californica multinucleocapsid polyhedrosis virus can enhance transcription from non-baculoviral promoters in mammalian cells. Journal of Biological Chemistry 278: 52564 - 52571.
Yellaboina S., Chakhaiyar P., Hasnain SE., and Ranjan A. (2003) Computational prediction of DtxR regulon-A Dissection of physiological process controlled by DtxR in Corynebacterium species. Proceedings of IEEE Computational System Bioinformatics Conference 442-443.**
Ali S and SE Hasnain (2002) Molecular dissection of the human Y-chromosome. Gene 283: 1-10.
Subhadeep Chatterjee and Ramesh V. Sonti. 2002. rpfF mutants of Xanthomonas oryzae pv. oryzae are deficient in virulence and growth under low iron conditions. Molecular Plant-Microbe Interactions. Vol.15(5), 463-471
Ahmed N, A Bal, AA Khan, M Alam, A Kagal, V Arjunwadkar, A Rajput, AA Majeed, SA Rahman, S Banerjee, S Joshi and R Bharadwaj (2002) Whole genome fingerprinting and genotyping of multiple drug resistant (MDR) isolates of Pseudomonas aeruginosa from endophthalmitis patients in India. Infection Genetics and Evolution 1: 237-242.
Ata-ur-Rasheed M, GK Vemuganti, SG Honavar, N Ahmed, SE Hasnain, and C Kannabiran (2002) Mutational analysis of the RB1 gene in Indian patients with Retinoblastoma. Ophthalmic Genetics 23: 121-128.
Bashyam, M. D. (2002). Microarrays for the Neurosciences : An essential guide. Daniel H. Geschwind and Jeffery P. Gregg (eds.). Book Review, Current Science 83:649-650. *
Bashyam, M. D. (2002) Understanding cancer metastasis: an urgent need for using differential gene expression analysis. Cancer 94: 1821-1829.
Brian L, SP Singh, D Lai, M Cartas, S Mahalingam and A Srinivasan (2002) Signature LXXLL motif is required for the transformation function of the unique human herpesvirus-8 protein, Kaposin. Journal of Virology 000: 000-000 (In press).
Bhupesh T and SC Mande (2002) Crystal structure of Mycobacterium tuberculosis chaperonin-10 at 3.5 A resolution. Acta Crystallogr v.277, 13257-13267.
C. W. Goulding, M. Apostol, D. H. Anderson, H. S. Gill, C. V. Smith, M. R. Kuo,J. K. Yang, G. S. Waldo, S. W. Suh, R. Chauhan, A. Kale, N. Bachhawat, S. C. Mande, J. M. Johnston, J. S. Lott, E. N. Baker, V. L. Arcus, D. Leys, K. J. McLean, A. W. Munro, J. Berendzen, V. Sharma, M. S. Park, D. Eisenberg, J. Sacchettini, T. Alber, B. Rupp, W. Jacobs, Jr. and T. C. Terwilliger (2002) The TB Structural genomics consortium: providing a structural foundation for drug discovery. Curr. Drug Targets- Infect. Dis. (2002) v.2, 121- 141.
G. Rajamohan, M. Dahiya, S. C. Mande, K. L. Dikshit (2002) Function of 90-loop (Thr90-Glu100) region of staphylokinase in plasminogen activation probed through site-directed mutagenesis and loop deletion. Biochem J. v.365, 379-389.
Hasnain SE (2002) Conference report MEEGID-V: Fifth international meeting on molecular epidemiology and evolutionary genetics in infectious diseases. Infection Genetics and Evolution 000: 000-000 (In press).
J. Dhar, A. H. Pande, V. Sundram, J. S. Nanda, S. C. Mande and G. Sahni. (2002) Involvement of a nine-residue loop in the generation of the macromolecular substrate-specificity by the activator complex through interaction with substrate kringle domains. J. Biol. Chem. v.277, 13257- 13267.
Kamal A, N Laxman, G Ramesh, P Ramulu, O Srinivas, K Neelima, AK Kondapi, VB Sreenu and Nagarajaram HA (2002) Design, synthesis, and evaluation of new non-cross linking pyrrolobenzodiazepine dimers with efficient DNA-binding ability and potent antitumour activity J. Med. Chem 45 4679-4688.
Kazim SN, SM Wakil, LA Khan, S Raiesuddin, MK Pervez, V Thakur, RC Guptan, SE Hasnain and SK Sarin (2002) Prevalence and profile of lamivudine induced mutations in the surface and polymerase genes of HBV among Indian population. Journal of Medical Virology 000: 000-000 (In press).
Kazim SN, SM Wakil, LA Khan, SE Hasnain and SK Sarin (2002) Vertical transmission of hepatitis B virus despite maternal lamivudine therapy.The Lancet 359: 1488-1493.
Nagaraju, J (2002)Application of genetic principles for improving silk production. Current Science 83, 409-414.
Nagaraju, J and Goldsmith, M. R (2002) Silkworm genomics - progress and prospects.Current Science 83, 415-425.
Nagaraju J, M Kathirvel, R Ramesh Kumar, EA Siddiq and SE Hasnain (2002) Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence -based ISSR-PCR and SSR markers. Proc. Natl. Acad. Sci. USA, 99: 5836-5841.
Nagaraju J, M Kathirvel, EV Subbiah, M Muthulakshmi and LD Kumar (2002) FISSR-PCR : a simple and sensitive assay for highthroughput genotyping and genetic mapping. Molecular and Cellular Probes 16: 67-72.
Narayanan E, Nagarajaram HA , C Ramakrishnan and N Srinivasan (2002) Effect of solvent molecules on the stereochemical code of glycine residue PROTEINS 49 326-334.
Panicker SG, ABM Reddy, AK Mandal, N Ahmed, Nagarajaram HA, SE Hasnain and D Balasubramanian (2002) Identification of novel mutations causing familial primary congenital glaucomas in Indian pedigrees. Investigative Ophthalmology and Visual Science 43: 1358-1366.
Panicker S G, Srirangan S, Mandal A K, Reddy ABM, Ahmed N and Hasnain S. E. (2002) Novel Mutations in FOXC1 wing region causing Axenfeld-Rieger anomaly. Investigative Ophthalmol. Visual Sci. 43: 3613-3616
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